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Detailed information on CNT30730404


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGRAT001207, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617948Corchorus capsularisSesamum indicum73.2582.1196.91065reverse complement
CNT30679693Corchorus capsularisTriticum urartu69.1298.7295.721005forward
CNT30434077Corchorus capsularisPapaver somniferum76.0799.3794.391106forward

Expression of CNT30730404

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MARVLVTPCCSMASGHGMREAVACGLITNPGANRAKEL*

>peptide 2 (33 aa)
MPTRDRRMLLLGLRRHLMRNQSLWVPGGVWSQG*

>peptide 3 (42 aa)
VHRSTLLFCRRCAPGLNWPGRSSGAVTLKKLECSKQAYACIH*

>peptide 4 (52 aa)
MINRDSRGHSYFMVRGEILGFMKDEQLRKHLPRMFSLIKNESWGLEDDQIPS*

Sequence

>CNT30730404
GTGCACCGGTCTACTCTTCTCTTCTGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTTCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCT
CAAAGCAGGCCTACGCTTGTATACATTAGCATGGGATAACATCATAGGATTTCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGA
CAGTCGGGGGCATTCGTATTTCATGGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATC
AAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACTAGGGATCGGCGGATGTTGCTTTTAGGACTCC
GCCGGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGACATAGTAAGGATTG
ACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGGTTAATTCCGTTAACGAACGAGAC
CTCAGCCTGCTAACTAGCTACGCGGAGGTGATTCCTCCGTGGCTAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCACGGAAGTTTGAGGCAATAACAGG
TCTGTGATGCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTT
CATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTG
TACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCA
TTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCTAGCAGAGCGACCCG
CGAACTAGTAACACAACACTCGGGGTCTAGGGCGCACAAGTGTGCTCTATTCCCCATGGCCCGGGTGCTCGTGACCCCGTGTTGTTCCATGGCCTCTGGG
CATGGGATGCGCGAGGCCGTCGCCTGTGGCCTCATAACGAACCCCGGCGCGAATCGCGCCAAGGAACTCTAACTTAAGGACCACGACGGAAGCCGCCCCG
GTCTCGGTGTGTTGGCGACCGACCGTGCCTAGTTTATTGAGAATCTATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGC
GAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGA