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Detailed information on CNT30730400


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004400, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619307Corchorus capsularisSesamum indicum98.5778.0393.571307reverse complement
CNT30507933Corchorus capsularisNicotiana attenuata98.2764.0995.861303reverse complement
CNT30383595Corchorus capsularisTriticum turgidum98.0483.0192.081300reverse complement
CNT30540266Corchorus capsularisBrassica napus94.0464.7595.991247reverse complement
CNT30311297Corchorus capsularisCamelina sativa95.5562.9195.661267reverse complement
CNT3075790Corchorus capsularisBrassica juncea96.9198.0296.031285reverse complement
CNT30653443Corchorus capsularisRosa chinensis98.5799.3294.261307reverse complement
CNT30719706Corchorus capsularisMalus domestica golden82.8194.7495.631098reverse complement
CNT30433931Corchorus capsularisPapaver somniferum98.6460.394.571308reverse complement
CNT30574507Corchorus capsularisVitis vinifera98.4972.0895.331306reverse complement
CNT30176196Corchorus capsularisVigna angularis98.1186.5693.71301forward

Expression of CNT30730400

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MCRPSQTPHLTMSSARIDRQMPVLGLKRGA*

>peptide 2 (44 aa)
MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRGLKDR*

>peptide 3 (97 aa)
WEGLGGGRDESKRQRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKEACTAHPPHGLLLRHVPLGAKGPYCGSAIGRRAHASLLARILT*

>peptide 4 (36 aa)
GRDLEGGGTNRSDKGLNLSGSWQQGHSATYNTPSRI*

Sequence

>CNT30730400
TGGGAGGGACTTGGAGGGGGGAGGGACGAATCGAAGCGACAAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCCG
TCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTACGCTTCAAGGAGGCCTGCACGGCTCATCCGCCGCACGGACTACTCCT
ACGACACGTGCCCTTGGGGGCCAAAGGCCCCTACTGCGGGTCGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGT
TCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAGGTTGA
ATTACTATTGCGGCGCGGCCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACA
CTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT
GTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAA
ACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAA
ACTCCCCACCTGACAATGTCTTCCGCCCGGATCGACCGACAGATGCCGGTCTTGGGTCTAAAAAGAGGGGCGTAGCCCCGCTTCCGATTCACGGAATAAG
TAAAATAACGTTAAAAGTAGTGGTATTTCACCGTTGCCGAAGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC
AACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATT
CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG
ACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTAC
CAGTTCTGAGTCGGCTGCTAATTGCC