Detailed information on CNT30730396


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530811Corchorus capsularisEucalyptus grandis100.1947.1495.561598forward
CNT30519140Corchorus capsularisJuglans regia100.3154.7996.061600forward
CNT3021662Corchorus capsularisCitrullus lanatus100.3139.3695.51600forward
CNT30632395Corchorus capsularisVigna unguiculata100.3152.8894.751600forward
CNT30195048Corchorus capsularisPisum sativum100.3142.5494.061600forward
CNT30711135Corchorus capsularisGlycine max100.3150.3694.751600forward
CNT30544869Corchorus capsularisBrassica napus100.1381.8694.551597reverse complement
CNT30265942Corchorus capsularisBrassica rapa100.1387.2794.611597forward
CNT30206613Corchorus capsularisHelianthus annuus80.8274.1794.651289forward
CNT30356368Corchorus capsularisLactuca sativa81.25100.1594.981296forward
CNT30434075Corchorus capsularisPapaver somniferum100.559.7293.71603forward
CNT3027145Corchorus capsularisPopulus trichocarpa80.3878.3696.571282reverse complement
CNT3035495Corchorus capsularisCucumis melo100.3130.3894.941600forward

Expression of CNT30730396

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 2 (33 aa)
MRLGRMWNGESRSADRLGAWTDADCGGGPSPGS*

>peptide 3 (97 aa)
DEKDFEKRVKECLKLSGGKRMGAGDAPRSDVERREPVRRSTRGVDRCGLWRRPKPGLLIRLWRRRRLDRGQQHAPSRRASAPACSRHRPVGSPFGPS*

>peptide 4 (70 aa)
MRIVAAAQARALDTPVETSSPRSWPAARAVSACLGTCVLPASACGLPIRPVLKHGPRSLTCVRVNGLENP*

>peptide 5 (32 aa)
MCASQRARKPVRRKEADWWDPSRVHRRPTLIF*

Sequence

>CNT30730396
AAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCTCGGTCGGATGTGGAACG
GCGAGAGCCGGTCCGCCGATCGACTCGGGGCGTGGACCGATGCGGATTGTGGCGGCGGCCCAAGCCCGGGCTCTTGATACGCCTGTGGAGACGTCGTCGC
CTCGATCGTGGCCAGCAGCACGCGCCGTCTCGGCGTGCCTCGGCACCTGCGTGCTCCCGGCATCGGCCTGTGGGCTCCCCATTCGGCCCGTCTTGAAACA
CGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCTAGAAAACCCGTAAGGCGTAAGGAAGCTGATTGGTGGGATCCCTCACGGGTGCACCGCCGAC
CGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCT
GGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAA
GTTTCCCTCAGGATAGCTGGAGCCCTTAGCGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTT
TAAATAGGTAGGACGGCGCGGCTGCTTTGTTGAGCCGTGCCAAGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATG
AACCGGAAGCCGGGTTACGGTGCCCAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAA
ATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTATACCCGGCCGTCGGGGCAAGA
GCCAGGCCTCGATGAGTAGGAGGGCGCGGCGGTCGCCGTAAAACCCGGGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCA
AATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGAGACGGGGGAAGCCCG
TCCGATAGCGCGCAAGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCGGCGGCTGACGGCAACGTTAGGGAGTCCGGAGACGTC
GGCGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCA
CGTCGCGTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAA
GGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGG