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Detailed information on CNT30730376


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09FW5|PSBC_NANDO, E-value = 5e-23

BLAST vs NONCODE:
NONCSAT000472, E-value = 6e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Corchorus capsularisOryza sativa53.6315.2188.79214forward
CNT3090620Corchorus capsularisSolanum tuberosum21.35.688.2485forward
CNT30300556Corchorus capsularisTriticum aestivum53.6312.5287.38214forward
CNT30539896Corchorus capsularisBrassica napus54.3912.4591.71217forward
CNT30236148Corchorus capsularisBrassica oleracea54.3914.1391.71217forward
CNT30441515Corchorus capsularisAegilops tauschii49.1230.4887.76196forward
CNT30598092Corchorus capsularisFraxinus excelsior25.568.0584.31102forward
CNT30628236Corchorus capsularisDaucus carota43.8616.190.86175forward
CNT30361727Corchorus capsularisSorghum bicolor49.1264.4787.76196forward
CNT30425595Corchorus capsularisPapaver somniferum56.1438.2991.07224forward
CNT30109402Corchorus capsularisOryza longistaminata53.6316.2589.25214forward
CNT30148380Corchorus capsularisBrachypodium distachyon45.6113.4286.81182forward
CNT30100129Corchorus capsularisOryza rufipogon53.6320.3889.25214forward
CNT30116897Corchorus capsularisOryza nivara46.1238.3388.04184forward
CNT30557406Corchorus capsularisPanicum hallii53.6350.7187.38214forward

Expression of CNT30730376

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSPDSFNSILQFNMYGGIKSIPTLSIRSPVSVKRSHEKNRLQITINSFFKSRCGCASSSCVP*

Sequence

>CNT30730376
AATGGCTCGGCTGGGTGGAATAGCCGAGCCAGAAAAAAAAGTTTAGATATAAAATGAGTTGAGAAGAAAGGAAAACAGAATACTTTTAAAATGTCACCGG
ATTCCTTCAATTCAATCCTTCAATTCAATATGTATGGTGGAATCAAATCGATTCCTACTTTAAGCATTAGATCTCCTGTCTCAGTTAAGAGGAGTCATGA
AAAGAACAGGCTCCAAATCACGATCAATTCCTTTTTCAAATCCCGCTGCGGCTGCGCGAGCTCTTCCTGCGTGCCATAAATGACCCACGAATAGGAAGAA
TCCTAGAACAAAATGGGAGGTAGCTAACCAACTTCTCGGCGAGACATAATTAACTGCATTGATCTCGGTAGCTATACCACCTACAGAATTTAAAGAACC