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Detailed information on CNT30730372


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 4e-32

BLAST vs NONCODE:
NONTPRT002187, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550219Corchorus capsularisIpomoea triloba71.5231.8796.461384forward
CNT30619000Corchorus capsularisSesamum indicum71.7345.4395.11388forward
CNT30632407Corchorus capsularisVigna unguiculata70.6550.6195.91367reverse complement
CNT30490123Corchorus capsularisOlea europaea43.3148.1397.85838forward
CNT30505430Corchorus capsularisNicotiana attenuata71.5859.0196.91385forward
CNT30712870Corchorus capsularisGlycine max43.0550.1295.92833forward
CNT3092080Corchorus capsularisSolanum tuberosum17.2157.1296.4333forward
CNT30569655Corchorus capsularisActinidia chinensis51.7328.1195.81001forward
CNT30605266Corchorus capsularisGossypium raimondii60.3155.7695.21167forward
CNT30216578Corchorus capsularisKalanchoe fedtschenkoi68.6839.996.611329forward
CNT30655407Corchorus capsularisRosa chinensis71.3741.3196.451381forward
CNT30207637Corchorus capsularisHelianthus annuus72.8772.0995.671410forward
CNT30628241Corchorus capsularisDaucus carota69.5149.8197.11345reverse complement
CNT30359520Corchorus capsularisLactuca sativa73.0755.5496.751414reverse complement
CNT30571858Corchorus capsularisVitis vinifera68.4238.296.981324reverse complement
CNT3057903Corchorus capsularisAmborella trichopoda60.6248.9692.581173reverse complement
CNT3038420Corchorus capsularisCucumis melo50.2368.0796.3972forward
CNT30331546Corchorus capsularisDioscorea rotundata13.5462.8392.75262reverse complement
CNT30725732Corchorus capsularisLupinus angustifolius12.5153.6695.87242forward

Expression of CNT30730372

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MARSPYATGASKGETLVVVWRPGRTLFVI*

>peptide 2 (41 aa)
MHWMDARALRRKDALIGERPWGDTVCDPWISDRETVSKLRG*

>peptide 3 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

>peptide 4 (45 aa)
MLSKVFTSFSPGFIRFFVYWMMEKPASHCAVNCNCEKVGRSGQRR*

>peptide 5 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMYQGSSDSPKRRDLESSFFKCQ*

>peptide 6 (29 aa)
MRTISRRRGAYSLYFLLVKRTTSNGVPFA*

>peptide 7 (29 aa)
MEKNALDGCPGIEKEGRFNRRKAMGRYRL*

>peptide 8 (29 aa)
VKKTNKKAFSLFLKHSNDKGSVHVKNIVF*

>peptide 9 (30 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA*

Sequence

>CNT30730372
GTAAAGAAAACAAATAAAAAAGCTTTCTCGTTATTTTTAAAACACTCTAATGATAAAGGGTCCGTTCACGTCAAGAATATAGTTTTTTGATGTAGTTGCT
ATTTGTTTTCTTTTTTTTTCTCTCTAAGATATTGTGTTGGTGTTAAGTGTACCTTATTACTTTATGGAAAAGAATGCATTGGATGGATGCCCGGGCATTG
AGAAGGAAGGACGCTTTAATAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGTTAGT
CTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTTGATAGCTAAAGGAAGGTAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGATAGC
GGATTGGGGTTTTTAAGAAAAACAAAGACTTCGCACTTTAAATGCTCAGCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGATTTTTTGTGTATTG
GATGATGGAAAAACCAGCAAGCCACTGCGCAGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCC
ATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGA
CCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATGTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGA
GGGGAGCTTATAGCCTTTACTTTCTATTAGTAAAGCGCACAACCTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGTAAATGGGAAGAGCGGCTTA
AGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATCTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTC
TAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTT
CCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAA
ACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCT
AAGCAATCACTTAGTGGAAAAGGAAGTGGTCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGT
CTAGCTCCATGGCACCGAAAATGTATCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTAGCGGGACGTTCT
GTCAATCGGGGAAGGTTTTTGGTAACAACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGC
CAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACG
AAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGCGAATTGGATGGATGATCGGGCCGAGGTTCTCGGCAAAGACCTCTTCCCCTCACTCTCCTT
TCCCTAATATTCACCTTGAGTCATCAAAGCCTTTCTGACTCGGCATGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAAAGGCGAAACTCTCGTCGTAGT
TTGGCGACCTGGGCGGACACTTTTTGTTATCTAAA