Detailed information on CNT30730320


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272010Corchorus capsularisChenopodium quinoa8.8546.2881.82286forward
CNT30608392Corchorus capsularisGossypium raimondii3.8438.6387.1124forward
CNT30321088Corchorus capsularisAsparagus officinalis8.3528.8281.85270forward

Expression of CNT30730320

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MIHGLTSYSLYSNANSGKNQSSRFDIGRT*

>peptide 2 (38 aa)
MKYSFFFKIIFYFIFKKKRCSVTLKNRFEFIKPNNLGL*

>peptide 3 (30 aa)
MDRDIPQCIKNFFSFIRVVIIRNLFFPIYL*

>peptide 4 (47 aa)
MGLCLKHFRYNCFTSLDTHGTSYYVSTKIRLFRIAYQSHFRWWLLVP*

>peptide 5 (40 aa)
FQEQKNHNDFFLYFPSFFAVLQWVYKKNFYQYSFFLGIFG*

>peptide 6 (50 aa)
IFRNKKIIMIFFFIFRHFLLSCNGFIKRIFISIVFFLVYLVDLVFLFMKK*

>peptide 7 (55 aa)
MNHQKIYIHFSPVNIGYNNIVWMYQPKQETRYFDIFDYFFIEKMNIYELITQISF*

>peptide 8 (75 aa)
MNNFLLMNNLSNHLITDYRILFSFAQFIYLSQPKKWKKFFYYFFNFFVSFETFRNNFVLFIIKDLAFNFFFFEFF*

>peptide 9 (47 aa)
MNLSIIFFVDSIFFVDSKKSCVLILVILMIYRKMSIYILSMKNFIKK*

>peptide 10 (48 aa)
MLVKGRISYKKLFYFLFLILESEFFRVEIKWILFLFVLLILSLFASLL*

Sequence

>CNT30730320
ATTTTCAGGAACAAAAAAATCATAATGATTTTTTTCTTTATTTTCCGTCATTTTTTGCTGTCTTGCAATGGGTTTATAAAAAGAATTTTTATCAGTATAG
TTTTTTTCTTGGTATATTTGGTTGATTTGGTCTTTCTTTTTATGAAAAAATGAAATACTTATAGTTTGATATAGAATAAATTGTCCATCATTTTTTACAG
AAAGGTGAACGGGTTCGATAATCAACATTCCCCTTAATTTTCTAAAAGTGAAATCTTTATGAATCATCAAAAGATCTATATTCATTTCTCCCCTGTGAAT
ATAGGATATAACAACATCGTTTGGATGTATCAGCCTAAGCAGGAAACCAGATATTTTGATATTTTTGATTATTTTTTCATTGAAAAAATGAACATCTATG
AATTGATAACGCAAATATCGTTCTAGGAAGATATCCATCTCTGTTTCTATTTTGTCTTTCTTTTTCTTTTTCTTTCTACGTTTTTTTATGTCTGAGTTGC
CTAATCTTCCTGACCGCCCTTTTCTTGGTTGGATCTAAGATTTCCTGTTTTGTGCATCTGGCGCAAGAATTTTTTCTTCTTCATTCGATGCTATAAGGGG
GTCCTTTTTTTATTTTCAATATTTGCATTTCCATTAAAATTTAAAAGAAGTAATTTTATTGGTATGATCCATGGTTTAACCTCATATTCATTATATAGTA
ACGCAAATTCTGGGAAGAACCAAAGCTCGAGATTCGATATAGGACGTACTTAGTATTTCTTCATTCTATTCCCATCCAATCAAAAGCACTTCTTTTTTTA
TTTGGATGGGTTGCTTGCTTGATCTTGATCAATAGGGCCCCTCTTATTAATTCTATCAATTATTTGAGACACAGTCCAAATACTTTTTATCCTCTTGGTA
CTCATATCGACCCAGGACTCAATGTCGGCCTTATTTCTAAGATAAATTCTCCACTCCAAATATCTTCTAGGCAACAATTTCCCTGTAGCGTCCATAATAT
CAAGATAATTATGGATAGGGATATCCCCCAGTGTATCAAAAACTTTTTTTCGTTTATCCGTGTTGTAATTATAAGAAATCTCTTCTTTCCTATTTACTTG
TAATGGTGATCCATAAGTATATGAGTCCTTCTTTTCTTGATAATTAATCGATTTATATGATAAAAAATCATATCCATAGTGTTTTTTAAAAATTATATTT
TTTAAATTTTTGTTCTGGATTCATTAATGAATTTCATATGAATCCCATTTTGTAAATTCTTTATTTCGAATCATATAGTGTTGATTGACTCTAGTTCGCC
ATTGTCCTGGTACTAATCTAAGCCATCTACTCTGAGATAAATCATATTGATAATGACCCCTTAACCAGTTTTTCCATTCATTCATCCCATGAGATAAATC
ATATCGATAATGACCCCTTAACCAGTTTTTCCATTTCTTCATCTTCTTCATCCCAGAATGCCAAAAGCTTTTCTGTCTTAACCCATAACGATGTCTTAAT
CTGGAATGAAATATTCTTTCTTCTTCAAAATAATCTTTTATTTCATTTTTAAGAAAAAGAGATGTTCCGTGACATTGAAGAATAGGTTTGAATTTATAAA
ACCTAATAACTTGGGTTTGTGATAATTTGTAAAATACATATGCTTGTGAAAGGGAGGATAAGTTACAAAAAGCTTTTTTATTTTTTATTTCTAATATTAG
AAAGTGAGTTTTTTAGAGTTGAAATAAAATGGATTTTATTTTTATTTGTTTTATTAATTCTTTCCTTATTTGCTTCATTATTGTAAATGAATTTATCAAT
AATTTTTTTTGTTGATTCCATTTTTTTTGTTGATTCAAAAAAAAGTTGTGTATTGATTCTTGTAATATTAATGATATATAGAAAAATGTCTATATATATC
CTTTCAATGAAAAATTTTATAAAAAAATAAAATTTACGGATTAATCGAATATTTCTTCTTTTTAAGATTTGCCAAAATTTTTTTGATGATTCTACTTTTT
TATCCTAATAACTTATTTTGTTGGAACTAATATTTAGAATTTTTTCTATTTGATTTTTGATTATGTTTGTTTCATTAGTCAGATCTTTTATTTGTTTTTC
TGTTAATGAATAATTTTCTGTTAATGAATAATTTGTCAAATCATCTTATTACTGATTATCGAATCCTTTTTAGTTTCGCCCAATTCATATATTTGTCTCA
ACCCAAAAAATGGAAAAAGTTCTTTTATTATTTCTTTAATTTTTTTGTTTCTTTTGAGACTTTTCGAAACAATTTTGTTCTTTTTATTATTAAAGATTTA
GCTTTTAATTTTTTTTTTTTTGAGTTCTTTTAAAATAGGCTCAAAAAACGAACGCCGTTCTCGAGGAGAACCGAAAGGCCGGTCCGTTTCCCTTCCCCAA
ACTGTTAAAAAGCAAAAACCATTATTTTGACCTTTCTTTTTTTCGTTGGATCTTTATCAGAGGATTGTTCTTTATCAGAGGATTGTAGTTTAAATCTGTG
CCAAGGTCTCAAGCGAAAAGGAAATAGGATTTTTATCTGAATACCGTCCGTTAACCAGTCTTTTGGAAATTCTGTTTCGGATAATGGAACACCATTATAA
GTGCATTTAATATGCATTTCTCGGTTCCAACCCTCTAAATCCTCGGACCACTCAGGAACTTGAAATAATAACATACGAGCAATGTTTTTAGCTATTATCA
ATGAAGGTAATATAATATATTTTCTAAGAATGGATTGAGTTATTAACAGCAAACCTCTTATCTCTTGAGCATATAAAATATTATCCCAAGCTTCTGCTAT
TTCCATCTGCATTGCCTCTTTTTCGTCTTTTTCTCTTTGGGCCTCCTCTTCTTTCTCAATTTTATTTTCTGTATAATTAGAATTTTTTGATTCTTTCTTT
TTACTTATCCCACTTCGAGATATTAGTTTCGTCGGTCCAGAAATATCAAAAAAAAAGATTTTTGCTATTCTGTCCAAAAAAGTGTCTAGTCTGTCCGAAA
AAAGTGGGGAATGGGCCTTTGTTTGAAACACTTCCGATATAACTGTTTTACGTCTTTGGACACGCATGGAACCTCTTATTATGTCTCGACGAAAATCCGG
TTGTTCCGAATAGCGTATCAAAGCCACTTCCGCTGGTGGCTCCTCGTCCCTTAGGCTCATTGGTATCATCGGTATCATCGGTCTCATCGGTATCATCGGT
TTTAGTATAAGTATCGGTATCATCGGTTTTAG