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Detailed information on CNT30730253


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K215|PIP22_ORYSJ, E-value = 7e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513856Corchorus capsularisJuglans regia28.3541.2182.17129forward
CNT30698271Corchorus capsularisQuercus lobata29.8943.1783.09136forward
CNT3070602Corchorus capsularisQuercus suber45.2765.482.04206forward
CNT30632234Corchorus capsularisVigna unguiculata15.620.7691.5571forward
CNT30711842Corchorus capsularisGlycine max10.332093.6247forward
CNT30569510Corchorus capsularisActinidia chinensis11.432590.3852forward
CNT30592144Corchorus capsularisMusa acuminata11.6523.0490.5753forward
CNT30218729Corchorus capsularisKalanchoe fedtschenkoi18.4628.9785.7184forward
CNT30355344Corchorus capsularisLactuca sativa14.5122.0787.8866forward
CNT30572629Corchorus capsularisVitis vinifera16.9228.9588.3177forward
CNT3033609Corchorus capsularisTheobroma cacao46.8132.7285.45213forward
CNT30318651Corchorus capsularisAsparagus officinalis16.9222.7184.4277forward
CNT30116611Corchorus capsularisOryza nivara9.8922.2891.1145forward
CNT30176173Corchorus capsularisVigna angularis14.9522.394.1268forward
CNT30113851Corchorus capsularisFicus carica16.4827.0885.3375forward

Expression of CNT30730253

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LVIPGLVLVVNDSSSKTPSRVDTNSPEIPAVQ*

>peptide 2 (57 aa)
MKIMPPKAQAIPRMPTPPQSASTRFLVGSVWTLYPITVNTVTYKKRRVAMNSAITAL*

Sequence

>CNT30730253
TTGGTCATCCCAGGCCTTGTCTTGGTTGTAAATGACAGCAGCTCCAAAACTCCTAGCAGGGTTGATACCAACTCACCAGAGATACCGGCGGTGCAGTAAA
CAAGGATGAAAATCATGCCACCGAAGGCCCAAGCAATACCAAGAATGCCAACGCCACCGCAGTCAGCATCAACAAGGTTCTTGGTGGGATCGGTTTGGAC
CTTGTATCCAATCACAGTCAATACCGTGACATACAAGAAAAGAAGGGTAGCAATGAACTCTGCAATCACAGCTCTGTAAAAGGACCATTTGGTCAGCTCT
TCGAAATCAATCAAGGGAGCTGGTGGTGGATCATGGAAAAGCAAAAGGAGCTGTTTGAGTTTGGGTTTTCTATGCTTTGGATGAAGAGTTGAGTGGGAGA
TTGAAGGGTTTTATAAAGGAGAGAAGATGATAAATGATTAATGGGAGTGATTATG