Detailed information on CNT3073023


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513655Quercus suberJuglans regia25.475.0391.1868reverse complement
CNT30379048Quercus suberManihot esculenta22.18.6494.9259reverse complement
CNT30503289Quercus suberNicotiana attenuata24.345.3392.3165reverse complement
CNT30709610Quercus suberGlycine max25.476.1286.7668reverse complement
CNT30292481Quercus suberTriticum aestivum28.4615.1185.5376reverse complement
CNT30222406Quercus suberHordeum vulgare28.4620.7185.5376reverse complement
CNT30389677Quercus suberTriticum turgidum21.359.6689.4757reverse complement
CNT30172962Quercus suberTrifolium pratense25.475.2789.7168reverse complement
CNT30661738Quercus suberTriticum dicoccoides28.4626.385.5376reverse complement
CNT30681951Quercus suberTriticum urartu31.099.3484.3483reverse complement
CNT30619843Quercus suberCajanus cajan25.473.6589.7168reverse complement
CNT3053061Quercus suberAmborella trichopoda24.346.886.1565reverse complement
CNT30326712Quercus suberAsparagus officinalis29.969.1686.2580forward

Expression of CNT3073023

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSCCGGNCGCGTGCKCGSGCGGCKMFPDISSEKTTTETL

>peptide 2 (87 aa)
DLTLSLLNHVINEGHGTSMKTRSTRFDLSSSFFSQSIPIFHLHQSLAFEKCLAAEETVAVELAASAAAAVEDARCSLTSAQRRPPPRP

Sequence

>CNT3073023
AGATCTAACACTCTCTCTCCTCAACCACGTTATAAATGAAGGTCATGGAACATCCATGAAAACTCGTTCTACACGGTTTGATCTTTCCAGCTCTTTTTTC
TCTCAAAGTATCCCAATCTTTCATCTGCATCAGTCATTAGCTTTTGAAAAATGTCTTGCTGCGGAGGAAACTGTGGCTGTGGAACTGGCTGCAAGTGCGG
CAGCGGCTGTGGAGGATGCAAGATGTTCCCTGACATCAGCTCAGAGAAGACCACCACCGAGACCCTT