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Detailed information on CNT30730167


BLAST search results

BLAST vs Swiss-Prot:
sp|P35450|EFGC_PEA, E-value = 6e-07

BLAST vs NONCODE:
NONCQUT004692, E-value = 4e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30218533Corchorus capsularisKalanchoe fedtschenkoi13.9420.9688.07109forward
CNT30721809Corchorus capsularisTriticum spelta32.2316.790.48252forward
CNT30645139Corchorus capsularisCannabis sativa30.0585.1493.62235forward
CNT3031228Corchorus capsularisTheobroma cacao14.7146.3794.78115forward
CNT30323623Corchorus capsularisAsparagus officinalis11.1327.8890.887forward

Expression of CNT30730167

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVIPRSRSAFNLSSTQAYLNDLLFISAASFSKRSITRLSIPPSL*

>peptide 2 (42 aa)
MSRGINDSAVVFGGLKLPQGYINGNTTLTLSLQLVKHPSILE*

>peptide 3 (41 aa)
MTSCSSQQLPSQSAQSHACQFLQACRSSDQWLLTYQSRHGQ*

>peptide 4 (35 aa)
SKNCRGWFKTSIKQYCNRKHTSILYKMLINIQGAQ*

Sequence

>CNT30730167
TCCAAGAATTGCAGAGGATGGTTTAAGACGAGCATAAAACAGTATTGCAACAGAAAACACACAAGTATATTATATAAAATGCTGATAAACATTCAAGGAG
CTCAGTAACAGACCTAAAACTCCTGAGCTGGTGAGATCTTGGTGAAAGATAAGAAGATGGATATAAAGCACTTTAAGTTTTAACTCAGAACAACAACCAG
AGGCGACACACAGACTTCAGAATGAAAAACACGCCACCGCCTATCAAGAACCCAGTTCTGTGAACAATATCCTAGACAAGACGGTGATAACTTGAAACTA
TAACCATCAAAACACGTAACTAGATGTCCAACCAAAGACCTACTGAAGAGAATTAACTCTTTATTATAATATCCATCACCATAGTCTTTTGCTGAATCAA
CCAAAACCTGCACGGTTCACTTGCCACCCTTCTTGGCAGCAGACTTGGTCACCTTGGCTCCACTTGGGTACCAGTAATCATGTTCTTGATGAAGTCACGA
TGTCCAGGGGCATCAATGACAGTGCAGTAGTATTTGGTGGTCTCAAACTTCCACAAGGCTATATCAATGGTAATACCACGCTCACGCTCAGCCTTCAACT
TGTCAAGCACCCAAGCATACTTGAATGACCTCTTGTTCATCTCAGCAGCTTCCTTCTCAAAGCGCTCAATCACACGCTTGTCAATTCCTCCAAGCTTGTA
GATCAAGTGACCAGTGGTTGTTGACTTACCAGAGTCGACATGGCCAATAACCACAATGTTGATGTGAACCTTTTCCTTACCC