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Detailed information on CNT30730067


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 6e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702960Corchorus capsularisQuercus lobata5.8928.0784.87119forward
CNT30401699Corchorus capsularisBeta vulgaris12.8132.5879.92259forward
CNT30488421Corchorus capsularisOlea europaea4.8522.3287.7698forward
CNT30708948Corchorus capsularisGlycine max13.650.3778.55275forward
CNT30563605Corchorus capsularisActinidia chinensis11.9250.9578.42241forward

Expression of CNT30730067

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MKVSEEETTSGQGCSLKSEKVSSDKGEDSADPSLSDSTGDTGEGEFSTLTVFSSGSGSATWTFLFLLLLSAAVFFLLPCF*

>peptide 2 (34 aa)
MENIFNFYKHIKASYTNYNINPKDSTHKQRLNSK*

>peptide 3 (60 aa)
MKEEKIGNFQDQNKNLDLDSENTWLFSNKSLSKFAFYSFVLKTQKQTQKSDFFFLKKTDD*

>peptide 4 (57 aa)
MISLGFQDSIPINLIRREFRQHESLRRRNNFRPRLFVEIRESKFRQGRRFCRPLTVR*

Sequence

>CNT30730067
ATAGACAAAGACAGTAAGATTAATAATACTAAGATAGAATTACAGAGAAGCTATGAAATTTTATAGACACTAACAAATTTTCTCCGTTTGGTCCAGCAAG
AAAAAACGAGCTGACCTGACCATGGAGAACATCTTCAATTTCTATAAACATATAAAGGCTTCTTACACAAATTATAATATAAATCCTAAAGACTCTACCC
ATAAACAAAGACTCAATAGTAAATAATAATAATAATAACCTAAAAACTGCCACTGCAACTGCCAAAAACTCCATTGCAGTGAGCTTACAAGGAAAGAGAA
TTAATACACAAAAAGATATAAAACTCTAAACGAACTGTTACATGATATCCTTAGGCTTTCAGGATAGCATCCCAATCAATCTCATAAGAAGGGAATTTCG
ACAACATGAAAGTCTCCGAAGAAGAAACAACTTCAGGCCAAGGCTGTTCGTTGAAATCCGAGAAAGTAAGTTCCGACAAGGGCGAAGATTCTGCCGACCC
CTCACTGTCCGATAGTACCGGAGATACCGGCGAGGGGGAGTTCTCCACCTTGACGGTCTTTTCCTCGGGTTCAGGCTCAGCCACGTGGACCTTCTTGTTC
TTGCTCTTGCTCTCAGCTGCAGTTTTCTTCTTGCTTCCTTGCTTTTGATTCAGTTCCAAGCTCTCACAAATGGCTTGAAGCTTAGCGTCAACAGAGGAAT
GTAAAGGCTTGTATTCACCGAAATCGCCGCCGATGTGGGAACCCTGGTGGCGAAGGTTAGGGAAGTTGAGTCTCGCAAAGTCACCTCTCAGTTTATAGGC
TGCTTTGTCATAAGCCAAGGCTGCTTCCTCGGCAGTGTCAAAAGTGCCCAACCAAAGACGTGTCCGGTTTTTAGGTAGCCGGATCTCAGCGACCCATTTT
CCCCAGTGGCGTTGCCTAACTCCTCTGTAGAGCTTGGTGGGTTTTGGTGGCGAACCCATTTGTTTCATTGGAACAGGTTTGGGGCTAAGAAAGCTAAGCA
TAAGATTGTTGGTGCTGTTTTGGGGTTGGGGGTTTTGGTAAAGGTAACTTGGTTGGTTGTTTTGGAGATGGAACTGAGCCTGGATCTGGTGGTTTAGCCC
AATTGTTGAACCGGGTTGTTGCTGGAAACCTGAAAATTGGTCAATTGGGTTGGGGTTGGGGTTGGTATAACAACAACCATCTTGGTAAAAACTGGGTTGT
GTTTGGGATTGGGAAGAAGAGAAAGAGAGGTAAGAAGTAGAAGGAAGACAAGGGGAAGGAGAAGGAGAAGAAGAAAAAGAAGAGTAAGAAGGGGAAGGGA
AAGAAGAAGAAGAAGAGGAAGAAACACTTTTCATAAAAGGTTCAAGTGCTTCCATCAACTCTCCACCATACAGATCTGATTGAACTGCTCTGCTACTATA
GAAATCCATTGTAGCTGCCATTTCTTTTTTAGATTAAACAAAAAAGATTCAAACTTTGGAAAAAAAACAATAAAGTAACCTGTTTCTTACCAAAATTTTA
AGAACAGGTTTCAAAACCCAGAACGGATTAAGGAGGTTTTTGTTAAAATAGATAACCCCTTGAAATCCAAGATAAAGCTTCTAAAAAATCGAACTTTGAG
GGACCAAAAATCACCCTCTAAGCTGATTTTATCTACAGAAAAAAAAATATTGAGAAACAAAAAAGAAGTAAAATTTAACTAGTGAAATGAAAGAAGAAAA
GATTGGAAATTTTCAAGATCAAAATAAAAACCTGGATCTCGATTCTGAAAACACCTGGCTTTTTTCAAATAAATCCTTGTCTAAGTTTGCTTTCTACTCA
TTTGTGTTAAAGACTCAAAAACAAACCCAAAAATCAGATTTTTTTTTTCTCAAAAAGACAGATGATTAACAGAAAGGGATTCAGAGAAGCGGGGATTAAC
AGAAAAGGGGGGGAAGATTGTTAGAAAAAGAAAATCAAAATCGCTCAAAGTGTTTAGATCCTCACAAGAACTCACTTTTTTTTTTTCCTCACAAGTTTTT
TTGTTGTGAATAACTCTCGACC