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Detailed information on CNT30730016


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41385|PSAL_SPIOL, E-value = 5e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673197Corchorus capsularisSetaria viridis16.9221.2582.14112forward
CNT30639966Corchorus capsularisNymphaea colorata25.6811.3380.59170forward
CNT30533956Corchorus capsularisEucalyptus grandis49.5546.9982.01328forward
CNT30516757Corchorus capsularisJuglans regia31.2741.8283.09207forward
CNT30698134Corchorus capsularisQuercus lobata39.431479.69261forward
CNT30376279Corchorus capsularisArabidopsis thaliana18.1320.1386.67120forward
CNT3021623Corchorus capsularisCitrullus lanatus31.1215.1782.52206forward
CNT30629841Corchorus capsularisVigna unguiculata33.0837.4483.11219forward
CNT30507460Corchorus capsularisNicotiana attenuata29.3164.0384.02194forward
CNT30712288Corchorus capsularisGlycine max27.0431.0283.24179forward
CNT3042792Corchorus capsularisPrunus dulcis15.4127.6488.24102forward
CNT30635301Corchorus capsularisCapsicum annuum16.4727.4691.74109forward
CNT3094368Corchorus capsularisSolanum tuberosum29.3174.984.02194forward
CNT30564216Corchorus capsularisActinidia chinensis14.843.9585.7198forward
CNT3084712Corchorus capsularisVigna radiata20.6948.4183.21137forward
CNT3075006Corchorus capsularisBrassica juncea13.920.4483.792forward
CNT30261201Corchorus capsularisBrassica rapa20.3915.281.48135forward
CNT30614377Corchorus capsularisArabis alpina14.3536.6886.3295forward
CNT30454500Corchorus capsularisSaccharum spontaneum14.6526.882.4797forward
CNT304795Corchorus capsularisZea mays16.9224.7882.14112forward
CNT30610860Corchorus capsularisGossypium raimondii26.1358.6485.55173forward
CNT30217087Corchorus capsularisKalanchoe fedtschenkoi39.2725.0278.85260forward
CNT30129085Corchorus capsularisCorymbia citriodora49.5531.1580.49328forward
CNT30344813Corchorus capsularisEragrostis tef16.9221.4181.25112forward
CNT30620323Corchorus capsularisCajanus cajan24.629.1282.21163forward
CNT30360483Corchorus capsularisLactuca sativa14.3521.6986.3295forward
CNT30154501Corchorus capsularisPrunus persica19.7941.9987.79131forward
CNT30644515Corchorus capsularisCannabis sativa19.9422.8488.64132forward
CNT3027985Corchorus capsularisTheobroma cacao20.0924.4992.48133forward
CNT3037832Corchorus capsularisCucumis melo49.2438.7280.06326forward
CNT30104607Corchorus capsularisOryza rufipogon15.7128.9781.73104forward
CNT30578384Corchorus capsularisOryza barthii12.0820.4183.7580forward
CNT30582394Corchorus capsularisEchinochloa crusgalli12.0821.458580forward
CNT30557050Corchorus capsularisPanicum hallii16.9229.4781.25112forward
CNT30112090Corchorus capsularisFicus carica26.898.785.96178forward
CNT30726871Corchorus capsularisLupinus angustifolius32.9312.1480.73218forward
CNT3049017Corchorus capsularisCucumis sativus31.122182.52206forward

Expression of CNT30730016

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGETHFHTSEKWVHGCPVSWEVREVPSNQRA*

>peptide 2 (54 aa)
MLRITTRPAAAKDPAAPATSVFLRGPALTNGPTRRNPWARPTSTPLRSGFTAVL*

Sequence

>CNT30730016
CAACAGGAACATGTTGAAACAATAAAAAATTCATCTTAACAAGAAAAATAGAGTAACAAATCACTTGATATTCGTTCCAAAAGGATGGTCCAAAGTAGAT
AGATTTACATTCAAGTTACAAATATGGAGTGACAGAACAAAGTAACAATTACAGATGTCATCTACTTAAAGTAGTAAGGAAGATCAAGGACATAGAGAAG
GAAGTAAGCCCAAACGACACCAGAGATTCCACCGAAGAAGAATCCACCGGTGAACTTAGCCCATCCATCGGCAGTTTGCAACTGGTCAGGCTTGGGGCAG
TGGAGGGCTCTCCTTCCTTGAAGGATGCAACGCCATACATTGTCAAACAAATGCTGAGAATCACAACAAGACCAGCCGCAGCAAAAGACCCAGCTGCACC
TGCAACTTCCGTGTTCCTTAGAGGGCCAGCCTTGACGAATGGGCCAACCAGGAGGAACCCATGGGCGAGACCCACTTCCACACCTCTGAGAAGTGGGTTC
ACGGCTGTCCTGTAAGCTGGGAGGTTAGAGAGGTACCAAGCAATCAAAGGGCTTGATGTAATTGGAGTCTCAAGGCTTCCAATGAAGGGGTCGCCATTGA
TGGGTTGAATCACTTGATATGTTGGCTGCAAAACAGAGCAAATCAAAAAAGAAAGAACACCA