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Detailed information on CNT30729941


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30238074Corchorus capsularisBrassica oleracea8.6320.2388.6853forward
CNT30620290Corchorus capsularisCajanus cajan9.9320.490.1661forward

Expression of CNT30729941

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RKNVISRLCIYIHVSSPQILMGYHKQLTNISK*

>peptide 2 (37 aa)
MQLTYITKNGLKEISKRVVAQTPQNQPIQTQLVASDM*

>peptide 3 (53 aa)
MAVLEAFFLLGFWAVELEADIFTHLNLPYLGLGLLLSFGLIVLNFEIGFTRAIS

Sequence

>CNT30729941
TCGCAAAAATGTGATATCCAGACTATGTATTTATATACATGTATCATCACCGCAGATTTTAATGGGTTATCATAAGCAGCTAACAAACATTTCAAAGTGA
AATATTATGTTACAGGAGAAATAAAGGTCACTCAAATGTTTCAGTTTCATTTGCTAATTTTACAATCATATGATATAATTTGACAGGACAGCAAAACTGA
AGCTGAAAAATGTACTAGACAAATGCAACTAACATATATTACCAAAAACGGATTAAAAGAGATTAGTAAACGAGTCGTGGCTCAAACTCCGCAAAATCAA
CCGATCCAGACTCAACTGGTGGCATCAGATATGTAGCAAGGAGCTCAGAGGCCATTGCTGCAATTAGTTCTTGTTAATCTCTGTGTTGAAAAGGCTCTCC
ATCTCATCAAAGTCTGTTGTGTAAAACCTTGGCGTCAAAAGGGTCTCTTTGATGGCCGTTTTAGAAGCTTTCTTCTTGCTGGGTTTTTGGGCCGTTGAAC
TTGAAGCCGACATTTTCACACACCTCAACTTGCCATATCTTGGACTTGGGTTGTTGCTAAGCTTTGGCCTCATTGTGTTGAATTTCGAGATAGGCTTTAC
AAGGGCCATCTCCG