Detailed information on CNT30729810


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3068994Corchorus capsularisQuercus suber3.8424.3388.07109forward
CNT30314174Corchorus capsularisCamelina sativa2.532.4285.9271forward
CNT30719439Corchorus capsularisMalus domestica golden6.1725.4785.71175forward
CNT30477502Corchorus capsularisArabidopsis halleri3.2526.4484.7892forward
CNT30705730Corchorus capsularisPrunus avium5.3331.5284.77151forward

Expression of CNT30729810

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MGKKTLDMTLFHKVLVILPYVHMTQNFPFKNSFHFDFLGKKNEKHLNKLEIIIFKSFSFFTRSPFLFKFHNILQK*

>peptide 2 (37 aa)
MIWLIGSHCNLRVSSTIHRSLVDVGRSNYYVFIINCR*

>peptide 3 (29 aa)
MIRLDDYMKSRTFFINLSHIHHSIAFASR*

>peptide 4 (57 aa)
MYDFLFSEIDFLARFLKIKFVWVHVFHLHILSKIIKFQFGFWFLVSIIKRTGTNENN*

>peptide 5 (47 aa)
MTGSNLIKLHFHVLPAGRMEYNSKTFQESFNNLLEIPHKVVTTESNN*

Sequence

>CNT30729810
TCTTAGATTTAGATCTAGGTCTTGCTCTGTGATCAGATGATTCGTCTTGATGATTATATGAAATCTCGAACCTTCTTCATAAATCTTTCGCATATCCACC
ACTCCATCGCTTTTGCTTCTCGGTGAATCCAAGAAAAAGCTTTCAACAGCGAAAAGAAAGTGGCTGATTCGAGGATCATTAGCATCCACCCTTTGATCAG
AAAGAAAAATCATTTCAACAAGGGAAACAATTTTCAATCTATTGTAAACTAAAAACCGGACAAAACCAGATTCAGACTCAAACTAATTGACTAAAAAAAA
AACTGAACTAACTCAAAAAACTGACTTAACCTAATAGATTCTGGGATCTTATTCCAAAATAAAAGTAAAAAAAATCAGTCTCCTTCTCCCCCTTGACAAA
AGAGTTAGGAGGAGGAGGAAGAAACAAAATTTTGATTTTTGAAGGGAGAAGGATGAGAGAGAAGGATTGATACTTGTTAATTATACTGATCATGTTTTGA
AATATGTATGATTTTCTTTTTTCTGAAATTGATTTTTTGGCGAGATTTCTAAAAATTAAGTTTGTTTGGGTCCATGTGTTCCATCTTCATATTTTGTCCA
AAATAATCAAATTTCAATTTGGTTTTTGGTTTCTGGTTTCCATTATAAAAAGGACAGGAACAAATGAAAACAACTAGATATGGGGAAAAAAACACTAGAT
ATGACCCTTTTTCATAAGGTACTTGTGATATTGCCATATGTTCATATGACTCAAAATTTTCCGTTCAAAAATAGTTTTCACTTTGATTTTTTAGGAAAAA
AAAACGAAAAACATTTAAATAAATTAGAAATAATCATTTTCAAGTCATTTTCATTTTTCACTCGGTCTCCGTTTCTCTTTAAGTTCCATAATATATTACA
AAAATGATTCTCTTATAGAATGTAGTTTTCAGAAATATTCATCACAATTATATTTTCATTTCCACATTTTTAAGACGGAAAATGCTCTCCCCCATCAGTC
CACATCATAAAATCGTATATTCATATTGAGATTTACAAATTCACAAATTCAATGACAACACTCGACGATTAATTGGATTTGAATTTAGAACGAAACTTTT
CAATTGAAAAGGGATAAAACCAATGATTTTCATTAGAAAAATGGATTCCACAAGGAAATTCAACAATTCCTGTTTAACTAAAAGTTGAATTCGATCATAT
TCAAACCCAAATATCTACCACTTTGTTGATCATTGTTCATGTAAACAGTTTCTCATTCCGAACACTGATTCTGAATTTGAACCAAAACTCTCATATTTGC
AGATCAAGGATAAGATGATGACCAAAAAAAAAAAAGGATAAGATAGAAAAACTAATTGTGGTCATTACTTACCGGGAATCCGATTCATATCGTTCTTTGT
TGTCATAAATAAGATTTCAGAAAGGCCCAGATATTTTTTGAGAATCACATGAATTATTATATTTTTGTTATATTTTTGTCAACTTGAGAAGGTTGTGGAT
GAAATCCCGGTATGAACATTGTTACATGACCCTTCAACTTGACCCTCCTGACCTATCATCAGAAAACTTACCATAATTTCTAAAACACCATTGAATAATA
GCCTAAAATCAAGGGATTTACCCTCAAAATGTCCATATTTATAACTAGGGGCTAAACCTAGATTTAAGGGAAGTTAAACCTGGATTTAATTTATTTCCTT
AATTATTAGGAGGGTCAAGTTGGAGGGTCAAAAAGAATTATCCATTGTTTTTTTCTTCACATGACAGGCAGCAATCTGATTAAGCTCCATTTCCATGTCC
TTCCAGCAGGTCGTATGGAGTACAATTCAAAAACTTTCCAAGAGAGTTTCAACAACCTGCTAGAGATTCCTCACAAAGTAGTAACAACTGAAAGTAATAA
TTAACAATAACCACAGAGCAAATACAAGGATCAGATAAACACAGCCATAAGTTTTATGCCAGTCAGCATCAAAATCACACCATAGCATTACAGCTATTTG
GATTTCGATATGAACACCCGGACAGAAAAACAATAGCAACTCTGCCACTCTGCAGGCCATGACACGATAAAAAAACATCTTTATTGCTACTACCAAAGCT
AGTACCACAGAACTAGAGAAAGTAAGATGTTACTATCACTTTAAGGGCGAGAGAGAGAGAGATGCCCTAAGTAGTCAGGATAGGGGGCATGTAATCAGAT
TTGGCACCAAGAACACGAGCCTTTGTGTCAGGGAAGTACTCAAATCCTGGTAGTTCAGTGACAGTTCCATCACTAGAAACACCGATGGGGTAGCGGAGCA
GGTGCTCATACCACAGTGCCATGCGGAAACCATGGACTTGACCTCTTGCTGGTTGTCTAAATGATAGATGATATGGTTGATAGGCTCCCATTGCAATCTC
AGAGTCTCTAGCACCATCCATCGATCGCTCGTTGATGTTGGCCGATCCAACTATTATGTATTCATCATCAACTGCAGATAGCCAAAAAAAAAAAGTGAAA
AGAATTTACAAGAATTAAATAACATAATAAAGAAACACAACTCGGTGCTCGATCAACTTCAAATGAGAAAAGCCTTTTTGTTTTCTTTTATAGTCACTTG
ATCATAGCTCCTTATGCCACCTAATGCCAATGAAATTTTCCAGATGACCCCAACCGTAGCAAATGTATGCTTGCAAGGGGCTTGAATTGATTCATAAAGA
AGTGTCTTTGTTCAATTAGTGGTTTTAAGTTTTAACAGTTAAGGACCTCCTACGGCATTAAATTTCCACAAAATAAAAGCTAGAGTATAGCAAAAAGTAG
TGAGGCGTGTGCATTGTGTTATTTTAAGGTTTTCA