Detailed information on CNT30729667


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202237Corchorus capsularisPisum sativum10.1335.9488.0492reverse complement
CNT30193417Corchorus capsularisSecale cereale22.1462.0490.55201forward
CNT30147536Corchorus capsularisMedicago truncatula52.4220.1884.24476forward
CNT30438074Corchorus capsularisAegilops tauschii25.559.9691.38232reverse complement
CNT30622536Corchorus capsularisCajanus cajan57.4931.5286.97522forward

Expression of CNT30729667

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLFISYSFRALGRCSFLKPEQLRTLGKIREDHLSEATEGAFLIRTER*

>peptide 2 (47 aa)
MTTTSSCCEGVARNQTAPPPDQLPVASQVGPRAVRSCQRLSSYQPPV*

>peptide 3 (29 aa)
MYMKFQTCSNPFQILNIMKLKKVYSYVMCQ

>peptide 4 (47 aa)
MGQRIKRFDFVSRDPPQGQESDSGTQATPPAPQSQIFSQIALRKCLY*

>peptide 5 (51 aa)
IENVEYTTSREGIWMESRSVKRRTFTFYVISKGALAYLYSIVSGLFLLFPL*

Sequence

>CNT30729667
GAATAGAAAATGTTGAATATACCACTAGTAGGGAAGGGATATGGATGGAGTCTCGCTCAGTAAAGAGAAGAACCTTTACTTTCTATGTTATTAGTAAAGG
CGCGTTAGCCTATCTATACTCTATAGTAAGTGGTCTTTTCTTGCTCTTTCCGCTTTAGTTTTCATTAAGGACGTTTAGGCTTGACTAATAAAATAGTTAG
GGCTTTTTCATCAGGGTGCGCAGGTCTGGAACTCTATACAAAGGTCGTTTCCTTTCAAATGACAACTACCTCTTCCTGCTGCGAGGGCGTTGCACGAAAC
CAAACCGCCCCTCCGCCCGATCAACTACCAGTTGCTTCGCAGGTAGGCCCGCGCGCGGTTAGGTCTTGTCAGAGACTCAGTTCTTACCAACCTCCGGTAT
GAAATCGACATGTTGCTAGCTTCAACTCGGTTGAATAAAAATCATTGATTCTCTATGTTGTTCATTTCTTATTCATTCAGGGCGCTCGGCCGGTGCTCCT
TTCTCAAACCAGAACAACTCAGAACGTTGGGGAAGATAAGGGAAGACCACCTGAGCGAAGCGACCGAAGGGGCTTTTCTTATCCGAACCGAACGATAGCG
CCTTAAAGCGAAACCTATCACGAGCAGCGTCGCTGCTTGATCGGCGGGGAGGAAAATCTCAAAGTATGGGGCAAAGGATCAAGCGCTTTGACTTTGTCTC
CCGGGATCCACCACAGGGTCAGGAGTCGGATTCCGGGACTCAAGCAACTCCACCAGCTCCTCAATCTCAGATTTTCTCGCAGATTGCACTCCGAAAATGC
CTCTATTGATTCCTAGAAATGTATATGAAATTCCAAACATGTTCAAATCCATTTCAAATTCTTAATATTATGAAGCTGAAGAAGGTATATTCATATGTTA
TGTGCCAG