« Back to Corchorus capsularis search


Detailed information on CNT30729539


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 2e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Corchorus capsularisSetaria italica40.4836.2781.25272forward
CNT30530404Corchorus capsularisEucalyptus grandis35.1266.4882.63236forward
CNT30316147Corchorus capsularisCorylus avellana66.6760.1381.25448forward
CNT30703138Corchorus capsularisQuercus lobata51.6466.2283347forward
CNT30499549Corchorus capsularisCoffea canephora62.886.1280.81422forward
CNT30615836Corchorus capsularisSesamum indicum17.7131.0787.39119forward
CNT30277485Corchorus capsularisChenopodium quinoa58.3345.9681.12392forward
CNT3021247Corchorus capsularisCitrullus lanatus60.7144.381.62408forward
CNT3068683Corchorus capsularisQuercus suber63.6986.9981.54428forward
CNT30524728Corchorus capsularisPhaseolus vulgaris56.9970.9384.33383forward
CNT30486152Corchorus capsularisOlea europaea56.141.6679.58377forward
CNT30506399Corchorus capsularisNicotiana attenuata33.4867.9884225forward
CNT30182233Corchorus capsularisSecale cereale48.0751.9378.33323forward
CNT30289293Corchorus capsularisTriticum aestivum15.0333.2282.18101forward
CNT30223417Corchorus capsularisHordeum vulgare19.9459.0383.58134forward
CNT30590847Corchorus capsularisMusa acuminata33.0448.5880.63222forward
CNT3084565Corchorus capsularisVigna radiata50.32086.09338forward
CNT30539234Corchorus capsularisBrassica napus62.3545.7979.47419forward
CNT30143836Corchorus capsularisMedicago truncatula65.7775.8181.9442forward
CNT30261302Corchorus capsularisBrassica rapa63.3982.479.58426forward
CNT30447453Corchorus capsularisSaccharum spontaneum50.358.9979.88338forward
CNT30131528Corchorus capsularisLolium perenne26.9339.2682.87181forward
CNT30653881Corchorus capsularisRosa chinensis60.7138.282.6408forward
CNT30718631Corchorus capsularisMalus domestica golden43.1550.5282.41290forward
CNT30343308Corchorus capsularisEragrostis tef37.0590.8881.53249forward
CNT30477892Corchorus capsularisArabidopsis halleri58.9337.0184.34396forward
CNT30360575Corchorus capsularisLactuca sativa49.1154.7382.42330forward
CNT30570592Corchorus capsularisVitis vinifera32.4467.4982.11218forward
CNT30319856Corchorus capsularisAsparagus officinalis40.0396.0779.18269forward
CNT30574680Corchorus capsularisOryza barthii33.0424.2478.83222forward
CNT30579496Corchorus capsularisEchinochloa crusgalli46.2879.5479.1311forward
CNT30499107Corchorus capsularisDigitaria exilis50.386.4579.88338forward
CNT30115589Corchorus capsularisOryza nivara33.0415.5678.83222forward
CNT30604168Corchorus capsularisOryza punctata22.9255.881.82154forward
CNT30337932Corchorus capsularisCynara cardunculus49.8540.8580.6335forward
CNT3064271Corchorus capsularisSelaginella moellendorffii31.5538.5579.72212forward

Expression of CNT30729539

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MTFSFLPVKKLSTTITLSPLAIRRSTRWDPTNPAPPVTTILRPFRFRPNGILPVGLADPNPTRFA*

>peptide 2 (83 aa)
MNWRSRASEMVDLVNFQEQRFHDVVPDKFEFWVSEVVHDVLLPSREEVIDDDHAVTPCNQTVHEVGPDEPCSTSYDDSQTLPF*

Sequence

>CNT30729539
ACCGATGGGATTAACGTTGCCCCAGTAAGTTTCCTTCTGAGGATGTTGCAGAGGGTCTCCGTAGACTTCGCTGGTACTGGTCAATAAGAACCTGGCACCA
ACTCTTTTCGCCAGCCCCAACATGTTCAATGTTCCCACCACATTAGATATGATAGTTTTGACGGGGTTGAATTTGTAATGAACTGGAGAAGCAGGGCAAG
CGAGATGGTAGATCTGGTCAACTTCCAAGAGCAAAGGTTCCACGACGTCGTGCCGGATAAGTTCGAATTTTGGGTTTCCGAAGTGGTGCATGACGTTCTC
CTTCCTTCCCGTGAAGAAGTTATCGACGACGATCACGCTGTCACCCCTTGCAATCAGACGGTCCACGAGGTGGGACCCGACGAACCCTGCTCCACCAGTT
ACGACGATTCTCAGACCCTTCCGTTTTAGGCCCAACGGAATCTTGCCGGTCGGGTTGGCAGACCCGAACCCGACTCGGTTCGCATAGGAGAACTTGTTCT
GGGTCTCGACGGGGAAGTAGGTAATCGAATCGGAGATCTGGTTGGAAAAGTGGTGATGGTGGCGAGGAACGTACGGGGCACGTGAAGTTGGGAAAATGGT
GAAAATCAGAGTGGCTATGGCAATGCCGACAACCACAAAGAGGAGGCGCTGCTCACGGAGCATGTAACGAAT