« Back to Corchorus capsularis search


Detailed information on CNT30729401


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RWE8|GGAP1_ARATH, E-value = 3e-64

BLAST vs NONCODE:
NONTCAT002555, E-value = 1e-73

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512995Corchorus capsularisJuglans regia17.4527.5486.88160forward
CNT30381030Corchorus capsularisManihot esculenta19.342.0488.7177forward
CNT30489557Corchorus capsularisOlea europaea11.5621.0786.79106reverse complement
CNT30711245Corchorus capsularisGlycine max18.8747.9282.66173forward
CNT30608750Corchorus capsularisGossypium raimondii17.8864.0692.07164forward
CNT30651855Corchorus capsularisRosa chinensis14.1836.1188.46130forward
CNT30726833Corchorus capsularisLupinus angustifolius16.5868.4784.21152forward

Expression of CNT30729401

Peptides detected in this lncRNA

>peptide 1 (80 aa)
EVQMVDGSKCTQAVVTQSEVRIPSFSCHIECKQEALMVNPLGQAFENSRYQQHMPIFNRTNLLNDTKNNVSLTSLLLLLN*

>peptide 2 (64 aa)
MNKRPRNSVYSRDVHNLTTPGLTPKLKSKSQTLLKTQNSQQKTTTIKRLKFSKIKTGFLSFLFP*

Sequence

>CNT30729401
TGGAAGTGCAGATGGTTGATGGTAGCAAATGCACCCAAGCTGTTGTAACCCAATCTGAAGTAAGGATTCCCAGCTTCAGCTGCCATATAGAGTGCAAGCA
AGAAGCTCTCATGGTCAATCCTCTGGGGCAAGCATTCGAGAATTCGAGGTATCAACAGCACATGCCCATATTCAATAGGACTAACCTGTTGAACGACACC
AAAAACAATGTTAGCCTTACAAGTCTATTACTCTTGCTCAACTAGTAACTCCATAACTTGAATTAGAGTTGACTAACATACATTAATAGCAACCATGCTT
GGAGAATTCTCAACATCAATGGGAGCATTTGGAAAGAACTGAACTTCACCGTCTTCACTTGCTTCAAACTGGAAAAGCACCTCTTCTTGCCCAACTTTGG
TGAAGTTAAATTTGTTCCCATCGAAGGGCTGGAGGACCTTATCAACACGGAACTCAGTTGGCCTCTTCTTAAGGAAGAGGAGATCGGAAGGACTACCGCC
TTCAGAAGGCAAAGCTCCACGCCCGCCGTGCGGCGAAGGGTTGCTGCTCTCTATCACACAACCCTTGCGTCGTACAGTTCGGACATGAATAAGAGGCCGA
GGAATTCCGTGTATAGCCGTGATGTCCACAATTTGACGACCCCGGGTCTTACCCCAAAACTCAAATCAAAATCCCAAACACTTCTTAAAACCCAAAACTC
CCAGCAGAAGACTACTACTATCAAACGGCTGAAATTTTCAAAAATTAAAACTGGGTTTTTGAGCTTTCTTTTTCCTTAGCTTTTTTTTTTTTCCTGGTGA
TTTTGGGGTGAAGAAGGAGAGAGGAAGAAAAGGGTAGATATATAGATAAGAGGGGAGTGATGGGGAAGGAAGAAATTGCGTGGTTAAGAGTTGAGAGAAG
TGGGTACTAAACAAAGC