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Detailed information on CNT30729106


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-102

BLAST vs NONCODE:
NONGMAT000502, E-value = 2e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541492Corchorus capsularisBrassica napus54.3634.0385.38424forward

Expression of CNT30729106

Peptides detected in this lncRNA

>peptide 1 (48 aa)
LNRFLFNDKTEVLTWRENIVTVCPSFRAPAPDTEKTKLLETKQRRRHD*

>peptide 2 (40 aa)
MPSLSWILALTLSIVSELSTSRVIVLPVRVLTKICIFHEI*

>peptide 3 (47 aa)
MEREHCNSLPILQGTSTRHRKNEITGNQTETKTRLNPPSLTGHHHEA*

Sequence

>CNT30729106
AATTGAATAGATTTTTATTTAATGATAAAACTGAAGTACTAACATGGAGAGAGAACATTGTAACAGTTTGCCCATCCTTCAGGGCACCAGCACCAGACAC
AGAAAAAACGAAATTACTGGAAACCAAACAGAGACGAAGACACGACTAAATCCTCCTTCACTCACTGGGCACCACCACGAAGCCTGAGGACAAGGTGAAG
GGTTGACTCCTTTTGGATATTGTAATCCGCCAAGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGGATTCCCTCC
TTATCTTGGATCTTGGCCTTGACGTTATCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTTTTACCGGTGAGGGTTTTGACGAAGATCTGCATCC
CACCTCGGAGCCTGAGGACGAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAA
TCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCTTGGATCTTGGCCTTAACGTTATCGATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTACCG
GTGAGGGTTTTGACGAAGATCTGCATCTTTCACGAGATTTAATTGAAGGAGAATTGAAGGGTAATTAGAGCTAGGGTTTGAGAGGCAAAGAGGAATTTCA
ATTAGCGAGTAGGAAATTGTATTTCACGAATACAAGGATGAAGGAAAGAAAGGGAAGAGGGGCTGATTATATAGAAGGAG