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Detailed information on CNT30729082


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-157

BLAST vs NONCODE:
NONGMAT000502, E-value = 2e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376617Corchorus capsularisArabidopsis thaliana57.2651.4484.96552forward

Expression of CNT30729082

Peptides detected in this lncRNA

>peptide 1 (47 aa)
NRFLFNDKTEVLTWRENIVTVCPSFRAPAPDTEKTKLLETKQRRRHD*

>peptide 2 (47 aa)
MEREHCNSLPILQGTSTRHRKNEITGNQTETKTRLNPPSLTGHHHEA*

>peptide 3 (40 aa)
MPSLSWILALTLSIVSELSTSRVIVLPVRVLTKICIFHEI*

Sequence

>CNT30729082
TGAATAGATTTTTATTTAATGATAAAACTGAAGTACTAACATGGAGAGAGAACATTGTAACAGTTTGCCCATCCTTCAGGGCACCAGCACCAGACACAGA
AAAAACGAAATTACTGGAAACCAAACAGAGACGAAGACACGACTAAATCCTCCTTCACTCACTGGGCACCACCACGAAGCCTGAGGACAAGGTGAAGGGT
TGATTCCTTCTGGATGTTGTAATCCGCAAGGGTCCTTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGAATTCCCTCCTTA
TCCTGGATTTTTGCCTTGACGTTGTCGATCGTATCCGAGCTCTCCACCTCTAGGGTGATGGTTTTGCCGGTGAGGGTTTTAACAAAAATCTGCATCCCAC
CGCGGAGCCTGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCT
CTGCTGGTCCGGTGGAATTCCCTCCTTATCGTGGATTTTTGCCTTGACGTTGTCGATCGTATCCGAACTCTCCACCTCTAGGGTGATTGTTTTGCCGGTG
AGGGTTTTAACAAAAATCTGCATCCCACCGCGGAGCCTGAGGACGAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGGCCGTCCT
CGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCTTGGATCTTGGCCTTAACGTTATCGATTGTGTCTGAGCTTTC
CACCTCGAGGGTGATTGTTTTACCGGTGAGGGTTTTGACGAAGATCTGCATCTTTCACGAGATTTAATTGAAGGAGAATTGAAGGGTAATTAGAGCTAGG
GTTTGAGAGGCAAAGAGGAATTTCAATTAGCGAGTAGGAAATTGTATTTCACGAATACAAGGAT