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Detailed information on CNT30729080


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-102

BLAST vs NONCODE:
NONGMAT000502, E-value = 8e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700914Corchorus capsularisQuercus lobata57.8573.7984.16442forward
CNT3033584Corchorus capsularisTheobroma cacao60.3467.388.07461forward

Expression of CNT30729080

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPSLSWILALTLSIVSELSTSRVIVLPVRVLTKICIFHEI*

>peptide 2 (29 aa)
LPNQTHSNKHNFNKQKIKGYTRIDFYLII*

Sequence

>CNT30729080
TTGCCAAATCAAACACACAGCAATAAACATAATTTCAACAAGCAAAAAATTAAAGGATATACTAGAATAGATTTTTATTTAATTATATAAAACTGAAGTA
ACATGGAGAACATTCTAACAGTTTACCCATCTTCAGGGTAAGGAAACACAGAAAAAACGAAAATACTGGAAGCGAAACAGACATGACTACTGGGCACCAC
CACGAAGCCTGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCAAGGGTGCGCCCATCCTCCAATTGCTTTCCGGCAAAGATGAGCCT
CTGCTGATCGGGAGGAATACCCTCCTTATCCTGGATCTTCGCTTTCACATTATCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGTTTTTCCGGTG
AGTGTTTTGACAAAGATCTGCATCCCTCCGCGGAGCCTCAGCACGAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGGCCGTCCT
CGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCTTGGATCTTGGCCTTAACGTTATCGATTGTGTCTGAGCTTTC
CACCTCGAGGGTGATTGTTTTACCGGTGAGGGTTTTGACGAAGATCTGCATCTTTCACGAGATTTAATTGAAGGAGAATTGAAGGGTAATTAGAGCTAGG
GTTTGAGAGGCAAAGAGGAATTTCAATTAGCGAGTAGGAAATTGTATTTCACGAATACAAGGAT