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Detailed information on CNT30729068


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-156

BLAST vs NONCODE:
NONGMAT000502, E-value = 1e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528694Corchorus capsularisEucalyptus grandis54.7962.2586.3686forward
CNT3079390Corchorus capsularisBrassica juncea52.8856.8783.53662forward
CNT3033564Corchorus capsularisTheobroma cacao55.0368.0286.07689forward
CNT30113924Corchorus capsularisFicus carica5261.5384.18651forward

Expression of CNT30729068

Peptides detected in this lncRNA

>peptide 1 (37 aa)
PNTLYHFKSLTMLTFWLFFKVQSLYGISRKNQHIIQK*

>peptide 2 (65 aa)
PKHIISLQELDDAYFLVVLQSSKLIWNIQKKPTHNTEISDGNSVIAYTCQINQININIISTSKKL*

>peptide 3 (40 aa)
MPSLSWILALTLSIVSELSTSRVIVLPVRVLTKICIFHEI*

>peptide 4 (47 aa)
MEREHCNSLPILQGTSTRHRKNEITGNQTETKTRLNPPSLTGHHHEA*

Sequence

>CNT30729068
CCCAAACACATTATATCACTTCAAGAGCTTGACGATGCTTACTTTTTGGTTGTTCTTCAAAGTTCAAAGCTTATATGGAATATCCAGAAAAAACCAACAC
ATAATACAGAAATAAGCGATGGAAATTCAGTAATTGCATACACTTGCCAAATCAACCAAATAAATATAAACATAATTTCAACAAGCAAAAAATTGTAAAA
GAAAGGAAAGGGATATAATTGAATAGATTTTTATTTAATGATAAAACTGAAGTACTAACATGGAGAGAGAACATTGTAACAGTTTGCCCATCCTTCAGGG
CACCAGCACCAGACACAGAAAAAACGAAATTACTGGAAACCAAACAGAGACGAAGACACGACTAAATCCTCCTTCACTCACTGGGCACCACCACGAAGCC
TGAGGACAAGGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCCAAGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAATCGCTGCTGGTC
AGGAGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTATCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTTTTACCGGTGAGGGTTTTG
ACGAAGATCTGCATCCCACCTCGGAGCCTGAGGACGAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGGGTCCTTCCGTCCTCGAGCTGCT
TTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGAATTCCCTCCTTATCCTGGATTTTTGCCTTGACGTTGTCGATCGTATCCGAGCTCTCCACCTCTAG
GGTGATGGTTTTGCCGGTGAGGGTTTTAACAAAAATCTGCATCCCACCGCGGAGCCTGAGGACGAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCC
GCCAAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCTTGGATCTTGGCCTTAACGTTAT
CGATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTACCGGTGAGGGTTTTGACGAAGATCTGCATCTTTCACGAGATTTAATTGAAGGAGAATTG
AAGGGTAATTAGAGCTAGGGTTTGAGAGGCAAAGAGGAATTTCAATTAGCGAGTAGGAAATTGTATTTCACGAATACAAGGATGAAGGAAAGAAAGGGAA
GAGGGGCTGATTATATAGAAGGAGGGGATGACCCAGTCAAAGAGGAATTGAG