Detailed information on CNT30728895


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 6e-47

BLAST vs NONCODE:
NONSTUT000620, E-value = 2e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530180Corchorus capsularisEucalyptus grandis24.2833.492.05176forward
CNT30316655Corchorus capsularisCorylus avellana31.1771.7590.27226forward
CNT30518728Corchorus capsularisJuglans regia29.6636.7590.7215forward
CNT30617700Corchorus capsularisSesamum indicum31.7210.0287.83230forward
CNT30628786Corchorus capsularisVigna unguiculata30.4845.188.69221forward
CNT30164510Corchorus capsularisPistacia vera27.5919.8690.5200forward
CNT30605213Corchorus capsularisGossypium raimondii26.3463.2590.05191forward
CNT30623440Corchorus capsularisDaucus carota30.4811.1190.05221forward
CNT30357019Corchorus capsularisLactuca sativa31.7221.7290230forward
CNT30326410Corchorus capsularisAsparagus officinalis31.8619.2789.61231forward
CNT30725948Corchorus capsularisLupinus angustifolius31.7228.0889.57230forward

Expression of CNT30728895

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKIPLERNLITTSLLVNISQATLATVMPIEMIGHEGQRA*

>peptide 2 (39 aa)
MKDSELNLLLLVLDLLWLGVSLLLTLLGATSEAEDKVEG*

>peptide 3 (57 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSKVMVLPVRVFTKICMAAAGVSEASKWKR*

>peptide 4 (38 aa)
TILSLKQTPFPTYKRIRTKYTEIIRRKRNKVKSAYTNI*

Sequence

>CNT30728895
CCACAATATTAAGTCTCAAACAAACACCATTCCCAACATACAAAAGAATTAGAACAAAATACACTGAGATAATAAGAAGAAAAAGAAATAAGGTAAAATC
AGCATATACCAATATCTAATTAACCATCCAAAATTCCAAAATCTGACAATTACCATCCATTTCAAAAGTACTAAATTAAACCAAATAAAGTACCATTAAA
CATAGATATAAAAGCTCATAAGAAAAACATGAAAATCCCACTAGAAAGGAACCTAATCACCACCAGCCTTCTGGTAAACATAAGTCAAGCCACACTTGCC
ACAGTAATGCCTATCGAAATGATTGGCCATGAAGGACAGCGAGCTTAACCTTCTTCTTCTTGTGCTTGATCTTCTTTGGCTTGGTGTAAGTCTTCTTCTT
ACGCTTCTTGGCGCCACCTCGGAGGCGGAGGACAAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGCTAAGGTTCTGCCGTCCTCGAGCTGCTTC
CCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGATTCAACCTCCAAGG
TTATGGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCATGGCTGCGGCTGGGGTGAGTGAGGCTTCGAAATGGAAGAGGTGATGTTTGGGGGGATTTTA
TATGTGATTTATTACTAGGGTTAGG