Detailed information on CNT30728687


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522415Corchorus capsularisSetaria italica27.7225.0789.2984forward
CNT30547627Corchorus capsularisIpomoea triloba28.388.5190.786reverse complement
CNT30304499Corchorus capsularisTriticum aestivum25.4125.3390.9177forward
CNT30232760Corchorus capsularisAnanas comosus25.0816.6789.4776forward
CNT30596339Corchorus capsularisOryza meridionalis21.7816.590.9166reverse complement
CNT30319113Corchorus capsularisAsparagus officinalis24.429.1993.2474reverse complement

Expression of CNT30728687

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MTRPTWQGLWVLLSGPPVASRELNHVGRAKACASCSYSGGHRVRLDSQSSENLPLSTVEG*

Sequence

>CNT30728687
GCCGAGCTGGGTAACGCTGGCTTGTAATCCGAGTGGGGGCATTGAGGTGATTGGACAATGACTCGGCCCACCTGGCAGGGTTTATGGGTGCTACTTTCTG
GCCCGCCCGTTGCAAGTCGAGAGTTGAATCATGTGGGCCGAGCGAAAGCCTGTGCTTCGTGCTCCTATAGCGGAGGGCACCGCGTGAGGCTGGATTCACA
GAGCAGCGAAAACCTCCCGCTTTCAACAGTGGAAGGATAACGGGCCGGAGCATCCTAGACCCAAATTGCCTGGTGGGCTGAGATCAATCGGACAATCACC
TTT