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Detailed information on CNT30728649


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Corchorus capsularisSetaria viridis21.7631.8584.81237forward
CNT30640134Corchorus capsularisNymphaea colorata28.1944.6286.64307forward
CNT30532843Corchorus capsularisEucalyptus grandis19.5629.180.75213forward
CNT30316236Corchorus capsularisCorylus avellana13.7732.6885.33150forward
CNT30547527Corchorus capsularisIpomoea triloba12.2130.7287.22133forward
CNT30513072Corchorus capsularisJuglans regia21.8557.4987.82238forward
CNT30373037Corchorus capsularisArabidopsis thaliana39.0320.8686.59425forward
CNT3019595Corchorus capsularisCitrullus lanatus25.9950.9987.63283forward
CNT30405829Corchorus capsularisBeta vulgaris39.0351.4584.71425forward
CNT3045373Corchorus capsularisPrunus dulcis29.0240.3181.65316forward
CNT30636551Corchorus capsularisCapsicum annuum13.7722.7387.33150forward
CNT30224110Corchorus capsularisHordeum vulgare10.1937.586.49111forward
CNT30561658Corchorus capsularisActinidia chinensis31.429.2381.87342forward
CNT3085191Corchorus capsularisVigna radiata14.8822.5987.65162forward
CNT30510528Corchorus capsularisSolanum lycopersicum38.0232.1487.68414forward
CNT30143750Corchorus capsularisMedicago truncatula19.4727.6886.79212forward
CNT30441158Corchorus capsularisAegilops tauschii14.2320.4283.23155forward
CNT30665536Corchorus capsularisTriticum dicoccoides31.552.0584.55343forward
CNT30313706Corchorus capsularisCamelina sativa20.5768.7183.04224forward
CNT3059659Corchorus capsularisArabidopsis lyrata17.9144.9384.62195forward
CNT30263812Corchorus capsularisBrassica rapa12.7620.4487.77139forward
CNT30612239Corchorus capsularisArabis alpina40.9616.9885.65446forward
CNT30445994Corchorus capsularisSaccharum spontaneum40.7731.1883.78444forward
CNT3015244Corchorus capsularisZea mays21.1282.7385.65230forward
CNT30210789Corchorus capsularisHelianthus annuus19.4758.5682.55212forward
CNT30716232Corchorus capsularisMalus domestica golden29.4824.2185.67321forward
CNT30345702Corchorus capsularisEragrostis tef30.8541.5880.06336forward
CNT30479087Corchorus capsularisArabidopsis halleri15.0656.3683.54164forward
CNT30361875Corchorus capsularisSorghum bicolor40.7740.2583.11444forward
CNT30596064Corchorus capsularisOryza meridionalis12.326.1784.33134forward
CNT30370118Corchorus capsularisOryza glumipatula13.6824.1185.23149forward
CNT30153558Corchorus capsularisPrunus persica17.4556.2182.63190forward
CNT30705326Corchorus capsularisPrunus avium30.2125.688.45329forward
CNT3024028Corchorus capsularisPopulus trichocarpa21.6731.9487.29236forward
CNT30332479Corchorus capsularisDioscorea rotundata12.5848.4182.48137forward
CNT30100260Corchorus capsularisOryza rufipogon21.0331.8983.84229forward
CNT30576103Corchorus capsularisOryza barthii6.5220.5887.3271forward
CNT30557952Corchorus capsularisPanicum hallii17.6323.5684.9192forward
CNT3050899Corchorus capsularisCucumis sativus14.3361.983.97156forward

Expression of CNT30728649

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MILTFKPVATFPEKTRPKGKESTLIRSWNHL*

>peptide 2 (51 aa)
MLHHHKNSSIYPVAYSLSSYSESGVICSFRPFLLRISATRFAAWFPTSRGS*

>peptide 3 (30 aa)
MPPCTEQLHGQQERQRTSWHELGEHQLPSH*

Sequence

>CNT30728649
CAGAGAGGTAATGTGAAGATCAAAAATATAACTCTAAACACAACACTGTCGTTCAGAATTCAGAATACATAATCATCAAAACATTAAAAATGTAACAGCT
GCAGATAGCAATTCTAGAGTCATAGTAAAAAGCATCCATCTGAAGAAGACATACATCATCATAAGTTGGGTGCTGTCACCCAAGAAGCAACTACTAACAA
AATATAAAAGAGACAGAAACAAAACTAAACTGCAGCACAAATATGCTGCACCACCATAAAAACTCTTCCATTTATCCTGTAGCTTACAGCTTGTCCTCGT
ACTCTGAAAGTGGGGTCATCTGCTCCTTCAGACCCTTTCTCTTACGGATTTCAGCTACAAGGTTTGCTGCCTGGTTTCCAACTTCCAGGGGATCTTGAGT
CATCATATCCCAATGATCAAACACACATTGTGGGAATGCCTGCCCTGATGTTGCAGCCCTCAACTGGCCAGAGAATCCAAAGGACTCGATAACAGGAAGA
TATGCCTTAATGTTGTAAAGTGGGGTACCAGGCCTCTGCATCTCCTCAAAAACGTGTCCACGCTTTTGGTTAAGCACACTGTAAATTCCACCAAGGGCTT
GCTCAGGGGCTTGGATCTCAACCAGATTCTTCAATGGTGCATACCACCATAGGATCAGACTTGGCCAAACGCTTCAGCCCTTCAACAAGTTTAGGAAGAT
CAGATGCCACCTTGCACTGAACAGCTACACGGACAACAGGAGAGACAGAGAACTTCATGGCACGAATTGGGTGAGCATCAACTTCCTTCTCATTAGTCAA
AGTGGCATTCTTGGTGATAAACTGATCCAAACCAACCATGGCAACAGTGTTACCACATGGAACATCCTCCACAGTTTCCTGCTTCTTTCCCATCCAAATA
ACAGTTCTCTGAACACTCTTAACATACAAGTCTTTCTTCTCACCAGGAACATAGTTTGGACCCATGATTCTGACCTTCAAACCAGTTGCGACTTTCCCAG
AGAAGACACGACCAAAAGGCAAAGAATCTACCCTTATCAGAAGCTGGAATCATCTTTGAAACGTAGAGCAATAAGAGGACCCTCAGGAT