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Detailed information on CNT30728459


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39817|CALX_SOYBN, E-value = 4e-95

BLAST vs NONCODE:
NONVVIT003147, E-value = 3e-70

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676354Corchorus capsularisSetaria viridis16.9420.8386.67105forward
CNT30517641Corchorus capsularisJuglans regia4046.181.05248forward
CNT30377662Corchorus capsularisArabidopsis thaliana57.4239.3882.87356forward
CNT30281153Corchorus capsularisChenopodium quinoa43.7141.6983.76271forward
CNT30629049Corchorus capsularisVigna unguiculata60.3232.6979.95374forward
CNT30709122Corchorus capsularisGlycine max20.1635.5187.2125forward
CNT30164689Corchorus capsularisPistacia vera56.4563.6484350forward
CNT30190468Corchorus capsularisSecale cereale56.7736.480.68352forward
CNT30397803Corchorus capsularisTriticum turgidum41.9433.1281.54260forward
CNT30561418Corchorus capsularisActinidia chinensis55.9734.4282.13347forward
CNT30238817Corchorus capsularisBrassica oleracea48.8756.8582.84303forward
CNT30144977Corchorus capsularisMedicago truncatula57.138.4481.07354forward
CNT30264134Corchorus capsularisBrassica rapa36.4526.0784.51226forward
CNT30605054Corchorus capsularisGossypium raimondii40.4844.2790.04251forward
CNT30349705Corchorus capsularisEragrostis tef30.4826.9681.48189forward
CNT30365925Corchorus capsularisSorghum bicolor47.263381.23293forward
CNT30120413Corchorus capsularisCitrus clementina60.4846.3582.13375forward
CNT3038556Corchorus capsularisCucumis melo34.8427.3485.65216forward
CNT30101562Corchorus capsularisOryza rufipogon50.163682.64311forward
CNT30116414Corchorus capsularisOryza nivara15.813585.7198forward
CNT30333676Corchorus capsularisCynara cardunculus35.6542.8378.73221forward
CNT30725707Corchorus capsularisLupinus angustifolius34.1938.4880.66212forward
CNT3048947Corchorus capsularisCucumis sativus59.6826.1580370forward

Expression of CNT30728459

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MRELVRWHRWWVFKMVFNVFPTFRILMLQNEVNLVSGPTFVRSKHNRVRGFIVKFLRLPPSLLRTKVFYICTT

Sequence

>CNT30728459
TGTCAAGCTCAAAGTAGTTGGGGTTAGGAATGTCACGAGGCTTCCAAATTCCCTTGTAATTGGGATTGTCAATTAGTGGAGCAGACCATTTACCCTTGTA
AGCGGGATTCCTCTTCATTGGTTTCTTCCATTCACCACAACCAGGTGCTGTCGCACATGCTGGATTATCAATTTTTGGGGCTTCCCACTCACCATCCTCT
TCATCGTCCCAATCTTCTGGCTTAGTTGCCTCAGGATCATCAATCTCCTCAGGTTTCTTGTCCTCTGGATCAGGTATAGTCTTGGCAGGGATAAGTGGAG
GCTCAAAATCTTCAGCTGAAAGGAAATCAGCCTTCTTCTTCTCCTCTCCATCAACCAGAATTCTAACCTCATTGTCAGGCTTCAAGATGGCAGTGTATAC
ATGAGAGAGCTTGTCAGATGGCACAGATGGTGGGTATTTAAGATGGTGTTCAACGTATTCCCCACTTTTAGGATCCTTATGCTTCAAAATGAAGTGAACC
TTGTTAGTGGCCCCACATTTGTCAGGTCCAAACATAATAGAGTAAGGGGATTCATTGTCAAATTCCTTAGGCTTCCACCCAGCCTCTTGAGGACGAAGGT
ATTTTATATATGCACCACCA