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Detailed information on CNT30728378


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676770Corchorus capsularisSetaria viridis4.4626.5487.556forward
CNT30546615Corchorus capsularisIpomoea triloba9.0742.3887.72114forward
CNT30515171Corchorus capsularisJuglans regia19.1725.5382.99241forward
CNT30375565Corchorus capsularisArabidopsis thaliana6.3632.3987.580forward
CNT3020673Corchorus capsularisCitrullus lanatus18.321.6480.43230forward
CNT30631135Corchorus capsularisVigna unguiculata22.9124.5380.21288forward
CNT3046104Corchorus capsularisPrunus dulcis10.1828.9685.16128forward
CNT30163276Corchorus capsularisPistacia vera8.9936.6985.84113forward
CNT30287172Corchorus capsularisTriticum aestivum8.9944.8483.19113forward
CNT30224613Corchorus capsularisHordeum vulgare4.4620.6692.8656forward
CNT30385683Corchorus capsularisTriticum turgidum4.4625.2389.2956forward
CNT3085870Corchorus capsularisVigna radiata9.2326.4285.34116forward
CNT30145769Corchorus capsularisMedicago truncatula724.1888.6488forward
CNT30658930Corchorus capsularisTriticum dicoccoides8.9947.2884.07113forward
CNT30261241Corchorus capsularisBrassica rapa6.6823.0889.2984forward
CNT30612661Corchorus capsularisArabis alpina6.3627.688580forward
CNT30609232Corchorus capsularisGossypium raimondii22.9154.2487.15288forward
CNT30712987Corchorus capsularisMalus domestica golden8.1928.8584.47103forward
CNT30644102Corchorus capsularisCannabis sativa9.6327.8288.43121forward
CNT3024898Corchorus capsularisPopulus trichocarpa21.9653.2882.25276forward
CNT3038976Corchorus capsularisCucumis melo13.0524.0181.1164forward
CNT30575194Corchorus capsularisOryza barthii4.4627.3291.0756forward
CNT30116634Corchorus capsularisOryza nivara5.013087.363forward
CNT30112244Corchorus capsularisFicus carica14.6427.8882.07184forward
CNT3065055Corchorus capsularisSelaginella moellendorffii9.7133.0686.89122forward

Expression of CNT30728378

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSTRLARRAAPVVARRSLCRHLGFEPPSQ*

>peptide 2 (69 aa)
MSNGVCSAAQSSVPSLSHESLNHTSAADGSQALHHHVENRPCQRQFPRQEQPKCHRRPKRFLEFQQLGT*

>peptide 3 (30 aa)
MGPIRFRVYNLTLERKIIFSQFTKLYSEIS*

Sequence

>CNT30728378
CATTAATCACCATATATAACATATAGTAATCTTTCCTATTCAAAATACCCACATATATATAATTAAATGATTCATTCCACAACCCTATCATTTGTCTGGT
TAATATCCGATAGTCATATTGGGTTTGATTAAATTCAGAGTCTATAGTCTCGGACATCATATAGATACATCATATTTTCTCAACTTACAAAACTCGAATC
TGAAACTTCTTAATCACTAAATTAAAAAAAAATCCGATAGTCATATGGGTCCGATTAGATTCAGAGTCTATAATCTGACATTAGAAAGAAAGATCATATT
TTCTCAATTTACAAAACTCTACTCTGAGATTTCTTAATCACTGAATTAAAAAATCTGATAGTCATATATATTGGGTCTCATTAGACTTCAGAGTCTATGA
TCTGACACCAGAAAGAAAGATCATACTTTCTCAATTTACAAAACTCGAATCCCATACCTCTTAATCATTAAATTAAAGATTGATAGTTAAGCAATTACTT
GATTGAATCAATCAATTGTGGATTTTAGCACTTATTGAAGAAAATTTCAAAGTGATTGACGTGAAATTAAAGTGTGCATGTGAGGAAGGGAAAAACTTAC
AGGGACGTGAGAGTCTCTGGCGCTGCGCTTGGCATCAGTGGCGGAGAAGACGGTGTAAACAAGAACAAAAGTACCAATAATCTCAGCACCAAGACCATCT
CCTTTGGTGTAGCCATGAGCAACGGAGTTTGCTCCGCCGCCCAAAGCAGTGTACCTAGTCTTTCCCATGAATCCCTTAACCACACCAGCGCCGCAGATGG
CTCCCAAGCACTGCATCACCATGTAGAAAATCGCCCTTGTCAACGACAATTTCCTCGCCAAGAACAACCCAAATGTCACCGCCGGCCCAAGCGATTCCTT
GAATTCCAACAGTTGGGCACTTAGTTTTTTCCTTAACAACGCCCATAACAGTCAAAACAGAGATATACAAGAAAAGGAAAGTGGCGACGAACTCAGCAAT
CCCAGCCCTGTAAAAAGACCAAGATGTCAACTCGCTTGGCTCGAAGAGCGGCGCCGGTGGTGGCTCGGCGTAGTCTTTGCCGTCATCTTGGCTTTGAGCC
GCCGTCCCAATAGGTTGCCTCTCAGCATACTTGTTTGCTCCCAATCTAACATCTTCTTCCTTGCCCTCCATTGTTTCTCTTTGCTTGCTCTGTTTTTTTG
AAAAAAATAAAAACTCTGAAAGCCAAAGAAATTGCAAAGCTTGAAACTCTGTTTTTC