Detailed information on CNT30728335


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381120Corchorus capsularisManihot esculenta1.6431.4585.978forward
CNT30434219Corchorus capsularisPapaver somniferum2.2529.6485.05107forward

Expression of CNT30728335

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTINKYSTNHSGNLSFQYSGMTKASSIKNKDKNKTIEL*

>peptide 2 (37 aa)
MKTNGGWQKRIGMPRLPPRVLRNNKKIIRKKTKKPCK*

>peptide 3 (46 aa)
MEKPKEKKRQQARQTLSKRQSDPSTKEQNQTTRHSRTRQGKKKDKK*

>peptide 4 (43 aa)
MNLSKEQIYSKMANAYYPYFKQNRKSLHPCQYLFIQILNKYDY*

>peptide 5 (40 aa)
MLIYKDSSGMTPKEALCLTPQKLSVSRPLLFVYGITLGLD*

>peptide 6 (39 aa)
KKSVSGKGGILLFIEPKKNSQIGDSSSLHYLQRTKTLSL*

>peptide 7 (67 aa)
MQRLGLNTFIQHFLYVTIPSIELTFNSCCTCNANEEYCSINGAMPLNKSCCLSLYVKLIRKEKEKII*

>peptide 8 (55 aa)
MCEEKTKTSMKIELNREEKKKPTKVTPSMNEMQHLPRQRKNPNMTKNPFKTHFKS*

>peptide 9 (50 aa)
MKPYLQVVIFLPIVRFALFSLPSPVLPTLPIKIQNQQENKKYEMSKKIRK*

>peptide 10 (47 aa)
MVDGKKGLECPDYPQEFYEITKKLYVKRPKNHANSTPNEYGESLCCP*

>peptide 11 (83 aa)
MNRKRRRTIELGFQANKALRKKKKKEGAFIVIRTGRLKPTRFDPAGPNGYPSNPLRPIFLLGYKKLPAAMPTASRALTTLDLT*

>peptide 12 (31 aa)
MISAISRRLRFTSKFRVIKVVYDQHVSNLKN*

>peptide 13 (29 aa)
MIKSSMPSISEINNLNVSITCLYIRTHQE*

>peptide 14 (35 aa)
MQIVPQMNMVRVFVALEIICTLIIIDRLYLYIHLI*

>peptide 15 (32 aa)
MKNRVKNKINFIHYNYRYSKQKNLSTHQFFKC*

Sequence

>CNT30728335
AAAAAAAATCTGTTAGCGGAAAAGGAGGAATCCTCTTATTCATTGAACCGAAAAAAAATAGCCAAATAGGGGACTCTTCCTCACTTCACTACCTACAGAG
AACAAAAACTCTCTCTCTCTGATCAATCCTCTCTACACAGTCTGTCTCTTCAATCAACGAACTCTCTCTCTTCCCCTCTTTACAGAGATTCTTTTCTCAT
CACTTTGGGCTGAAGACTGAGTCTCTCTCTTCTCACAAGGATTCAATTCTTATCTCACTAATACACTCAAGAAAACTCTGAATGCTCCCCTTATTGCAAA
AAGCTTTCCCTTCCATGAACACACCGAATTGAAAAACAGAGAAAATCTCTCACAATTGAAACTACAGACACTCAAGTCTCTGAAAGAAAAAAAAAACGAA
TTCACACTCCCACTTTCATCACACAAAAATTGATCAGAAAGAAAAAAAAACTTCACCTTTGCTTTAGTGTAGTTCTTCTCGATCCCATTCCAGGTTTCTA
TTCTGACTTTTCCGTCAAAACAAAATTCAGAAAAATAAAAGAGTTAGGGTTCTTCACATTTGGGATTTGGGGCTTTCTTATCTAAAGCTCCAATTCCAAA
TTCCTTCGGTGATTGGCTAGGGTGAAGAGGGCAGAAAAACATACCTCACTGTCGGGTTTATCCGACTGTTGAGGTGGGAGATCGGAGCTATGGAATTTCA
TTCGGTTAGAGGTGGATTCAAGGAGGTTTAGGCTTGATCTTGGGAAACAAGGACCAGATTCGAGCCCGCGAGGCGACGGAGAGCTGATCTGGAGGCTTTG
GCGTCTATTGGCGGCGAAACGGAGTTCCTACGCGGGGGCGACCACTGTGAAGCGATACCCGATGAACCGTAAGCGGCGGCGCACAATTGAGTTAGGGTTT
CAGGCAAACAAAGCTTTGAGGAAGAAGAAGAAGAAAGAAGGGGCTTTTATAGTGATCCGTACAGGTCGACTTAAACCAACCCGGTTCGACCCAGCTGGCC
CAAATGGCTATCCATCCAACCCACTGAGGCCCATTTTCTTGCTGGGCTACAAAAAATTACCTGCAGCCATGCCGACAGCATCCAGAGCTTTAACAACCCT
GGATCTGACTTGAGCATTTGTTAAGTTTGACGTACCAAGGCCAACTGCTACATCAGCTTCAAACTGTAGGCATCGCATGATGAAAGATGCCATACTTTGC
AAGCAACCTCTGTAGAGAGAAGGTTGAGGTTTTTTTTTTTTTTTTGGTAATAGTCAAATATATGTAAAGATTAAGTTAACAAAATCATCTTTGGATGATT
TCTGCAATATCTAGAAGGTTGAGGTTCACATCAAAATTTAGAGTAATAAAGGTAGTTTATGATCAGCATGTATCAAACTTGAAGAACTAAACACATCCAG
ATTGGTCAGCAAGGATTCGTTAAAGATTAATTATTGTAGCCAACCACTATGAATTTGTCAAAAGAGCAAATATATTCCAAAATGGCGAATGCATATTACC
CATACTTTAAACAAAACAGGAAATCTTTGCATCCATGTCAATACTTATTTATACAGATTCTAAATAAATATGACTATTAATAAATATAGTACAAATCATT
CAGGAAATCTTAGCTTTCAATATTCAGGCATGACCAAAGCAAGTTCCATTAAGAACAAAGACAAAAACAAAACAATAGAACTTTAGTAACATGAAAAATA
GGGTAAAAAATAAAATCAACTTTATTCATTATAATTATCGCTACTCCAAACAAAAAAACTTATCCACTCACCAGTTTTTCAAATGTTGATTACCTGTAAT
GCTCCACTTCTTGTCCCTCTCAAAAGAATTCAAATCCTACAATCGAACATAAGAAATGGTTAATCCTTCAATTTTCAAATGAGGCCATAGAGTAGAAATT
GAATGGTAAATTACTGATTCTGCAAATTCATAAGGGAACACAATGGCAAATGCAATTAAATTGGAGCAAATAAGCTAAACTTCTGGAAAATTAAAGGGTC
TAAGTAGTTTATATCCGTGTATTAATGCTGAAAAAAGAAGGTAGTTTGACCTGAGCAAATGCAAAGGCTAGGTCTGAATACATTCATTCAGCATTTTCTC
TATGTAACAATTCCCTCAATAGAATTGACGTTCAACAGTTGTTGCACTTGTAATGCCAATGAAGAGTATTGCAGCATAAATGGAGCCATGCCATTGAACA
AATCTTGTTGCCTCTCCCTGTATGTGAAACTCATAAGGAAAGAAAAAGAGAAAATCATTTAACTTGAATTTGCAGAAAATAAGCACTCAAATATTCAACA
ATGAAGTCTGGAAAATAACTCATAATTCTAAACCAAGTTCCATCACACAACTACATATTATATATTTACAGATCATACCTGAAAAGCTTAAATCTGGGAG
TCACAAAAGAGATTGAAGAAAAAAAAATACAATTGAACAACTCAAAACCCAAAATTGAAATAAAATTTAACAAAAAAAGATCACAACGCTATGATTAAGA
GCAGCATGCCAAGCATCAGTGAAATCAATAACCTAAATGTGAGCATTACATGCTTATATATAAGGACTCATCAGGAATGACGCCAAAGGAAGCACTCTGC
CTCACTCCTCAAAAGCTCTCTGTCTCTAGGCCACTTCTGTTTGTATATGGAATCACATTAGGGTTGGATTAATTCTTGAAAATGCATGAACATCAGGATA
CATGTGTGAGGAAAAGACCAAAACTTCCATGAAAATCGAATTGAATAGAGAGGAAAAAAAAAAACCCACCAAGGTCACTCCATCGATGAACGAAATGCAA
CATCTGCCACGACAAAGAAAAAACCCAAACATGACCAAAAACCCATTTAAAACGCATTTTAAATCATGAAACCATACCTGCAAGTCGTCATCTTCTTACC
CATTGTTCGCTTTGCTCTTTTCTCTCTACCATCGCCTGTTCTCCCCACTCTTCCAATTAAAATCCAAAATCAGCAAGAAAATAAGAAGTATGAGATGAGT
AAGAAAATAAGAAAATAAGAAAATCAAATTCCAAAAGAAACATGAATTAGAAAGACATATCATACCTCTCCAATTCTCCACTTCTGTCTCTCCCCCGAAT
TCTCTTTTCTCTTTGGAATTTCAATTCTCTGCTTCTGCTTTACATGGTAAATCACACTTGAAAGAAACTGAAGAGAGAGAAGAAGACTGAAGCAGAAACT
GATATAGATTGAAGAGAGTGAGGGAGGAGAAGAGTCTAGAAACTGAGTGGGAGAAGAAAGAAAGTAAAAAGACTGAGGGAGAAGCCTACCAAAGAGAAAA
AGGAGGGAGGTTGCAATTGGGGAAAGCAGAAAGAATTGCTCAAAAAGAAAAAAAAACCAATGGAGAAACCAAAGGAAAAAAAAAGACAGCAGGCCAGGCA
AACTCTGAGTAAACGTCAGTCAGACCCATCGACCAAAGAGCAAAACCAAACGACCAGACACTCAAGGACAAGGCAAGGAAAAAAAAAAGATAAAAAATAG
GCCCAACCACAAAATAAATAAACCCTCTGAATCTCGTAATTAAACCCAAAGTCCAATTAAGCAAACAAATGAATCAAAATTTATAACCCAAACTCACCCT
TAAATATAAATAAGCATAATTTATAAGTAAAATTAAGGTCCTAACACCAATATTCCTAATCAAATGACCCATCTTTGTAAGCATTATAATTTATAATCGA
AACTCACCCTTAAATATAAATAAGCACACTTTATAAGCAAAATTAAGACCCTAACACCAACATTCCTAAATCAAATGACAAATGACCCATCTTTGAATCA
ATAATAGTTTAAATCAAAATCTCTCTTGAAAAGACAAAATGGACAAAAAAATAAACTAATCATGATTAGCACACAAAATAATTTGAAATTGAAAGGAAAA
TTAAGAGTTATAAGCCAATTCTAATAGCCTTAATCAACAACATTATCTCTCTAAACACTAAGCAAAATAAAATAATGTCTCAAGGAGACAATAAATGATT
AAAATTGACATCCAAACCCTAATCATGACATGAAATCTAAACCCTAAACATAACATATAAACCCTAGGTGAGATAAAGAAATAATCCTAAAACTATATTA
AACCCTAGGTGAAATGAAAAAATAACATGAACAACCATATTCACCCTTGCCAACCACACCAAATTACATGAAAACCAATGGTGGATGGCAAAAAAGGATT
GGAATGCCCAGATTACCCCCAAGAGTTCTACGAAATAACAAAAAAATTATACGTAAAAAGACCAAAAAACCATGCAAATAGTACCCCAAATGAATATGGT
GAGAGTCTTTGTTGCCCTTGAGATAATTTGCACTTTAATTATTATTGATCGTTTATATTTATATATCCATTTAATTTAAAAAGTGAAGACTAGTGGATTC
AAAATGTATTCAAGTGGGATTTTTTTTTCAGGCCTAAAAAAAAAGTGGGGATTTTTTTAGGAACATATCAATAAGCTAGATCTATACTTCTAATTGTCTC
ATGCCATAAATAAACTCGAACACAGAAGAAATATGTTGGACAAGCACATTTAAATCTTTTACAACCAACAGGGTCTTTTGTCTTTGAGCAGAATATTAAG
CAATAGTTAGCTCCACTGATAGGTGCATGATATCTGCATCTTATTGTCCTGGGTTCAAGTCCCATGAATTGTAGGTTTAACGTATTTGTTCAATTTCTTA
ATTGGGTTTAGTGACTTAGTCCATTGTAATGTATATTTTTGACAAATTTTTTTAGATGGG