« Back to Corchorus capsularis search


Detailed information on CNT30728102


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONTPRT002153, E-value = 4e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Corchorus capsularisNymphaea colorata60.5851.6184.23913forward
CNT30513311Corchorus capsularisJuglans regia44.1356.2685.41665forward
CNT30380449Corchorus capsularisManihot esculenta45.3269.7784.77683forward
CNT30169911Corchorus capsularisPistacia vera60.4549.1187.05911forward
CNT30538027Corchorus capsularisBrassica napus59.9947.6882.41904forward
CNT30311067Corchorus capsularisCamelina sativa43.8652.3484.72661forward
CNT30608677Corchorus capsularisGossypium raimondii61.1871.3687.85922forward
CNT30356895Corchorus capsularisLactuca sativa57.0790.3483.6860forward
CNT30643414Corchorus capsularisCannabis sativa57.7382.782.3870forward
CNT3031793Corchorus capsularisTheobroma cacao62.1876.2488.58937forward
CNT30120599Corchorus capsularisCitrus clementina60.4591.3785.07911forward
CNT30111662Corchorus capsularisFicus carica60.4567.3882.22911forward

Expression of CNT30728102

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MERRLLLDVVIGQGTAVLELFSGEDETLLVGRDPFLVLDLGLDVIDGIGTLDLESYCLSGEGFHEDLHLSERKSQKSKGF*

>peptide 2 (40 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTRWRVDSFWML*

>peptide 3 (53 aa)
MPSLSWILALTLSIVSELSTSRVMVLPVKVLTKICIPPRRRRTRWSVDSFWML*

>peptide 4 (57 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVIVFPVRVFTKICIFQKENHKKAKVFD*

>peptide 5 (60 aa)
MKGRLLLDVVIGQGTAVLELFTGEDKTLLIWRNSLLVLDLGFDIIDGVGALDFEGDGFPG*

Sequence

>CNT30728102
AGCTCCCTCCAATGGCTTCCAGTATTGAAAGGAAATTATAATTGAGATATTATGTTCAAATGAAAGATAATTAAACAGTGAAGAAAAAGAGAAGCATATG
CGGAAAAACACCAACTTTTATTCCAGAGCAGGTAATTAGATTACCATTACACGATACTTAAAAAAGACCCAGAAATTAACTAAAAGCAAAAACATAGACC
AATGAGCGATTCAATTAAGGCTCATTACACAGACAATCTTAAAACTTGAAACTTTAAAGCAAAGACAGACTCTTTCATTGAGAACAATCACTGCCCACCA
CGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTTTGAATGTTATAATCAGCTAGAGTCCTTCCATCTTCCAATTGCTTCCCTGCAAAGATAAGCCTTT
GCTGATCTGGGGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTATCAGAACTTTCAACCTCCAGGGTGATTGTTTTCCCTGTCAA
GGTCTTAACGAAAATCTGCATACCTCCCCTGAGCCTCAAGACAAGATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCG
AGCTGTTTACCGGCGAAGATAAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTATCGATGGTGTCGGAGCTCTCGA
CTTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTGACAAAGATTTGCATACCGCCGCGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTT
GTAGTCAGCCAAGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTA
ACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATACCGCCACGAAGACGGAGGACAA
GATGGAGCGTCGACTCCTTTTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGAT
CCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTCTTTCCGGTGAGGGTTTTCACGAAGATC
TGCATCTTTCAGAAAGAAAATCACAAAAAAGCAAAGGTTTTTGATTGAATTTTGAGAATAGAGAATCGAGAGAGAAAGCAAAGAAATTAGGTTTTCTTTG
TTTGGATGAGAGAAAAGGGAAGGCGAAGGGCTGCTTTTATAGGGAAAGGAAATCGTGACCGACTCGAAATAGGAGTTTGGGAATCTTAATTCCAAAGGGA
AAGGGAAAAGAAAAGTCCGGAAAAGGCGAGAAAATTGCGGTCATATGAGTCGGCGTAACGTTAACCACTCGTTTACTATTTTTTTATTTGTGATTTTTTT
TAAAGCC