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Detailed information on CNT30727992


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2L8Y7|RR16_GOSHI, E-value = 3e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696488Corchorus capsularisOryza sativa36.1521.2590.64235forward
CNT30277302Corchorus capsularisChenopodium quinoa45.3851.7585.08295forward
CNT3047211Corchorus capsularisPrunus dulcis16.7720.6486.24109forward
CNT30393155Corchorus capsularisTriticum turgidum26.9227.0589.71175forward
CNT30435419Corchorus capsularisAegilops tauschii34.9225.9790.31227forward
CNT30659176Corchorus capsularisTriticum dicoccoides34.926990.75227forward
CNT30610242Corchorus capsularisGossypium raimondii45.2371.3694.9294forward
CNT30229322Corchorus capsularisAnanas comosus9.5426.2796.7762reverse complement
CNT30655380Corchorus capsularisRosa chinensis49.2338.9389.69320forward
CNT30127870Corchorus capsularisCorymbia citriodora28.4633.2189.73185forward
CNT30685543Corchorus capsularisTriticum urartu26.6263.1490.17173forward
CNT30622544Corchorus capsularisCajanus cajan19.8527.6284.5129forward
CNT30424174Corchorus capsularisPapaver somniferum47.2359.1589.58307forward
CNT3058916Corchorus capsularisAmborella trichopoda35.6911.2890.95232forward
CNT30150933Corchorus capsularisBrachypodium distachyon24.7760.5388.82161forward
CNT30576782Corchorus capsularisOryza barthii36.1522.990.64235forward

Expression of CNT30727992

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MKKKPQYEFKLIHIVLYECNIFFLLLFYFYIILYSNYTFLF*

Sequence

>CNT30727992
TTGAATTTTGCTTGATTAAGACTAAGTTCCGTAAAAACCCCGCCTTCTTTAAAATATAATGAACAGTTCCTGTGGGTTGAGCTCCTTTTTTAAGGAAATA
GAGAATATCGGGAACATTTAAATAGGTTTGATTATTTATCGGATCATAAAAACCCACTTTTCGAAGATCTCTTCCCTCTCTTCGGGATCGAACATCAATT
GCAACGATTCGATAAACGGCTCGTTGCTTTCTACCACATCGTTTCAAACGAAGTTTTACCATAACATTCCTCTAGTTTGGAACATTGATTCAATTATAGA
ATCATGAATAGTCATTGGTTCAGTCGGTACATAGTAATCCATGTAGACTTCTTCTTTCTATTCTATATAAAGAAAATAGATAATTTATGAAGAAAAAGCC
TCAATACGAATTCAAATTAATCCATATTGTATTGTATGAATGCAACATTTTTTTTTTACTTTTATTCTACTTTTATATTATATTATATTCTAATTACACC
TTTCTATTCTAATTAATAAGAAATTAATAATATCATTAATGATAATATCACGAATAATATATATAAATAACACAAATAAACTAATCCTTTTGAATCTGCC
CTGCATCTTCAAATAACTGGATAGATCAAATAACTCGATAGAATAGATTC