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Detailed information on CNT30727961


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534291Corchorus capsularisEucalyptus grandis14.5527.1686.13173forward
CNT30511260Corchorus capsularisSolanum lycopersicum16.0647.3987.43191forward
CNT30595814Corchorus capsularisOryza meridionalis7.9127.9885.1194forward
CNT3049477Corchorus capsularisCucumis sativus12.9554.2390.26154forward

Expression of CNT30727961

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRLNIS*

>peptide 2 (49 aa)
MDVRHFKRPQSHNTILTTYLLFLYFKQTTKINKFKSSKNRSTSQDTYEN*

Sequence

>CNT30727961
ATATAGAAGAGGATAATTGCAACAAAAAAAAAAGTTATTTAGAAACTTAGAATAAGCCATAAGGTACATAGTTCTTTCTTCTGCATGCTTTACTGAAATT
AACTCGACGATCTTAAAGAAATTAAAACTCAAATGCAAAGCAAAAACTACAGCATAATGACTAATTCAACTGTTTCACATTCCAAACAAACCAGCAACCG
GAAGTTGTGGTTTTGAATGGCCAATAAGCAGTCTCAAATCATTTAGTCATCATATCCTTCTGGTTCCTCTTCCTCACCATACTCATCTTCATCAGCTGTT
GCATCTTGGTATTGCTGATACTCAGAAACCAAATCATTCATGTTGCTCTCAGCCTCAGTAAACTCCATTTCATCCATACCTTCCCCGGTATACCAATGCA
AGAAAGCCTTCCTCCTAAACATAGCTGTGAACTGCTCGCTCACACGCCTGAACATCTCCTGAATGGATGTTGAGTTGCCAATGAATGTTGATGCCATCTT
GAGGTGAGAGGAGCAAAACCCACCATGAAGAAGTGAAGGCGAGGGAATGGGATGAGATTCACAGCAAGTTTCCTGAGATCAGAGTTGAGCTGACCAGGGA
ATCGCAAGCAGCAGGTGACTCCAGACATTGTTGCAGAAATCAAGTGATTCAAATCACCAACTGTCAAAGATCAAGCAGAAAATAACATGGATGTAAGACA
TTTCAAAAGGCCCCAAAGCCATAATACAATCTTAACGACTTACTTACTATTCTTATACTTTAAACAAACAACAAAGATCAACAAGTTCAAAAGTTCCAAA
AACAGGTCAACATCGCAGGACACTTATGAAAACTAGATAGACAGTGAGCGAAGTTACTTCCAGATCACTCAAAGCAAGAAGGGCTTTCGTTTTCATTCAA
ATTAAGCGTGGATATCACTAATCTTATACTTTAAACAACAAAGATCAACAAGTTTAAAAGTCCAAAAAACAGGTCAAAATCACTTAACACTTATGAAAAC
TAGATAGACAGTAAGCAAAGTTATTTCCAGATCACTCAAAATAAGAAGGGCTTTCGTTTACATTCAAACTAAGTGTAAATATCAATTTCCCTCCACTTAA
AGTGTCAAAATCATAGCTACTAGTGTCAGATCTACTACATCAAAATAAGATTTAATCAACAATTCAAACAAAATAATAGTAGATCTAGT