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Detailed information on CNT30727960


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR0|TBB3_ARATH, E-value = 2e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674836Corchorus capsularisSetaria viridis27.9436.9484.29140forward
CNT30522590Corchorus capsularisSetaria italica27.948.3785140forward
CNT3047350Corchorus capsularisPrunus dulcis31.3468.8686.62157forward
CNT30397469Corchorus capsularisTriticum turgidum27.9411.8585140forward
CNT30204946Corchorus capsularisHelianthus annuus16.5722.1387.9583forward
CNT30684516Corchorus capsularisTriticum urartu27.9453.2385140forward
CNT30721065Corchorus capsularisTriticum spelta26.7559.8281.34134forward
CNT30368464Corchorus capsularisSorghum bicolor27.9417.0383.57140forward
CNT30621647Corchorus capsularisCajanus cajan20.1643.7287.13101forward
CNT30426941Corchorus capsularisPapaver somniferum32.1427.9585.09161forward
CNT30573622Corchorus capsularisVitis vinifera15.9729.4188.7580forward

Expression of CNT30727960

Peptides detected in this lncRNA

>peptide 1 (84 aa)
LKTIAVLGLLSDDIKDRVDQLSAFSIVTFSPVVTGTGLTKNEVVWSENLANRTRSDAVHENGTGDESTTAGFIVVDIDSLKLKI*

>peptide 2 (29 aa)
LEDNRSSRPPFGRHQGQSRSTQRLQYSDL*

Sequence

>CNT30727960
CTTGAAGACAATCGCAGTTCTCGGCCTCCTTTCGGACGACATCAAGGACAGAGTCGATCAACTCAGCGCCTTCAGTATAGTGACCTTTAGCCCAGTTGTT
ACCGGCACCGGACTGACCAAAAACGAAGTTGTCTGGTCGGAAAATCTGGCCAACAGGACCAGATCTGATGCTGTCCATGAGAACGGCACGGGGGACGAAT
CTACCACAGCTGGCTTCATTGTAGTAGACATTGATTCTCTCAAGCTGAAGATCTAAGTCTCCCTGGTAACGTCCGGTTGGATCTATGCCGTGCTCAGCAC
ACACAACTTCCCAGAACTTGGCTCCGATCTGGTTACCGCATTGCCCTCCCTGGATGTGAAGAATCTCACGCATTTTTGCTGTTTGGGGTTTGGTTTCGGA
GGAGGGAAATTGGAAATTTGGAAAATATTTGAGAGAGGAGAAAAAATGGATACGGGAGTGAGAGTGGAGAGTGAGTAGGTTTGTTAGGGAGGTTTTTATA
T