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Detailed information on CNT30727926


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504800Corchorus capsularisNicotiana attenuata55.5691.6382.72405forward
CNT30553152Corchorus capsularisOryza glaberrima37.1739.1684.5271forward
CNT30217674Corchorus capsularisKalanchoe fedtschenkoi27.0255.1886.8197forward
CNT30204030Corchorus capsularisHelianthus annuus58.16102.1782.78424forward
CNT30100887Corchorus capsularisOryza rufipogon60.0856.8881.05438forward

Expression of CNT30727926

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRENTSATLVELEIMQTALWTLARITLSHHR*

>peptide 2 (29 aa)
AKICHDHLKKPRPTNAYWNHKYKLSTIKR*

>peptide 3 (43 aa)
MTGAYEESMKWILGYGTKLVWNSVTSTFNAPSNLSEAVKEEIT*

Sequence

>CNT30727926
GGCCAAAATATGCCATGATCATTTGAAGAAGCCAAGGCCCACAAACGCATATTGGAATCACAAATACAAATTGTCAACAATTAAACGATAGCATAGAATA
CCAAAAGAGTATTTCTTTAACAGAAGTCTTCAACAAGCTTTGAAACGGAGATAAGAATCAAAGCTGACAACATACAGAAGCAAACATAAAAACGAAAGGG
ACAACAATTCATCGGCTCACAAACTGCAAGAAGCCCTCAAGTCAAACATATATCTAGTACTCCTCGTCACCATCATCCTCACCCTCAGCTGACTCAGCAC
CAACTTCTTCATAATCCTTCTCAAGTGCAGCAAGATCCTCACGAGCCTCAGAGAATTCACCTTCTTCCATACCCTCACCCACGTACCAGTGAACAAAGGC
ACGCTTGCAGTACATAAGATCAAACTTGTGGTCAATGCGGGAGAACACCTCAGCCACACTGGTAGAGTTGGAAATCATGCAAACAGCCCTTTGGACCTTG
GCGAGGATCACACTTAGCCATCATAGATGAAGGCTCAAAGGCACTGTTGGTGATTTCAGAAACTGAGAGCTGTTCATGGTAAGCTTTCTCGGCAGAGATG
ACTGGAGCATATGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACCAAGTTGGTCTGGAATTCAGTCACATCCACGTTCAATGCACCATCAAACCTGA
GTGAGGCAGTCAAGGAGGAAATCACCTGA