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Detailed information on CNT30727764


BLAST search results

BLAST vs Swiss-Prot:
sp|P45726|PALY_CAMSI, E-value = 4e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30162467Corchorus capsularisPistacia vera27.6237.2283.84198forward
CNT3023983Corchorus capsularisPopulus trichocarpa21.4814.8982.47154forward
CNT30113881Corchorus capsularisFicus carica20.7813.8781.21149forward

Expression of CNT30727764

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLHKDLSQFLHQWVCSTARIINVSENVFAVNGFE*

>peptide 2 (31 aa)
DAIKSEKSERRERSREINILKILHICIHSYH*

>peptide 3 (57 aa)
MGRGAPSHSLRHSSIGSMSFPWHIAVKTLSNSSPGDLTFSPVKSPVPSSSLTNLYNG*

>peptide 4 (36 aa)
MLQFSGKLKCLHSSHSHHLSMHAPQGLVSISASMGM*

Sequence

>CNT30727764
GATGCAATAAAGAGTGAAAAGAGTGAAAGGAGAGAAAGGAGTAGAGAAATAAACATATTAAAGATATTACACATATGCATTCATTCATATCATTAACTTG
GTTTTACATGGAAATTAAACAAATAGACAAGTGAAGAAAAAAAAAACAAAGAAAAAAAGATTTGGGATAACAAATTTTGAAATGTTCAAAACGAGAAAGC
AAATTAACTAGCAGATGGGAAGAGGGGCACCGTCCCATTCCTTGAGACACTCAAGCATTGGATCAATGAGTTTCCCCTGGCACATAGCTGTGAAAACCTT
GTCAAATTCCTCACCAGGTGACCTAACTTTTTCACCAGTCAAAAGCCCAGTTCCAAGCTCTTCCCTCACAAATTTATACAATGGGTAACTTCTGCATTCC
TTGATTCTGTTTGGCACTGCCACATTTGACCCATTCTCAAGTGCCACTCTTGCACTCTCAACTTCCTTAGGCAACAAAGTCTTCAATTCCTCTTCAAATG
CTGCAATTTTCTGGAAAATTGAAGTGCTTGCATTCTTCTCATTCTCACCATTTGTCAATGCATGCTCCACAAGGACTTGTCTCAATTTCTGCATCAATGG
GTATGTAGCACTGCAAGGATCATCAATGTAAGCGAAAACGTATTCGCGGTCAACGGCTTTGAGTAAGTCCTTCTCACAGAATCTTGAAGGGTGGAGTTCA
CCATTGGCACCAGTGGT