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Detailed information on CNT30727763


BLAST search results

BLAST vs Swiss-Prot:
sp|P45726|PALY_CAMSI, E-value = 5e-112

BLAST vs NONCODE:
NONSTUT002995, E-value = 6e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317648Corchorus capsularisCorylus avellana14.482085.34116forward
CNT30162471Corchorus capsularisPistacia vera47.0745.3780.64377forward
CNT30636813Corchorus capsularisCapsicum annuum50.1923.5977.61402forward
CNT3095942Corchorus capsularisSolanum tuberosum51.3131.7480.29411forward
CNT30568707Corchorus capsularisActinidia chinensis24.2236.8181.44194forward
CNT30144087Corchorus capsularisMedicago truncatula13.9833.3384.82112forward
CNT30607757Corchorus capsularisGossypium raimondii24.2265.9981.44194forward
CNT30203244Corchorus capsularisHelianthus annuus10.3621.5684.3483forward
CNT30573527Corchorus capsularisVitis vinifera51.3126.9279.08411forward

Expression of CNT30727763

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLHKDLSQFLHQWVCSTARIINVSENVFAVNGFE*

>peptide 2 (36 aa)
MLQFSGKLKCLHSSHSHHLSMHAPQGLVSISASMGM*

Sequence

>CNT30727763
AAAGATATTACACATATGCATTCATTCATATCATTAACTTGGTTTTACATGGAAATTAAACAAATAGACAAGTGAAGAAAAAAAAAACAAAGAAAAAAAG
ATTTGGGATAACAAATTTTGAAATGTTCAAAACGAGAAAGCAAATTAACTAGCAGATGGGAAGAGGGGCACCGTCCCATTCCTTGAGACACTCAAGCATT
GGATAGCTGTGAAAACCTTGTCAAATTCCTCACCAGGTGACCTAACTTTTTCACCAGTCAAAAGCCCAGTTCCAAGCTCTTCCCTCACAAATTTATACAA
TGGGTAACTTCTGCATTCCTTGATTCTGTTTGGCACTGCCACATTTGACCCATTCTCAAGTGCCACTCTTGCACTCTCAACTTCCTTAGGCAACAAAGTC
TTCAATTCCTCTTCAAATGCTGCAATTTTCTGGAAAATTGAAGTGCTTGCATTCTTCTCATTCTCACCATTTGTCAATGCATGCTCCACAAGGACTTGTC
TCAATTTCTGCATCAATGGGTATGTAGCACTGCAAGGATCATCAATGTAAGCGAAAACGTATTCGCGGTCAACGGCTTTGAGTAAGTCCTTCTCACAGAA
TCTTGAAGGGTGGAGTTCACCATTGGCACCAGTGGTCAAAACCTTCTTAGCAATCTGGCTCACAGTGTTCTTTACCGTGTTCCTCAAGTTTTCTTCCAAA
TGCCTCAAATCAATAGCTTGGCACAGAGCAACTAAATAAGTGGAAGACATAAGCTTCAAAATATCAACAGCTTCAGAACAATAAGAAGCCATGGCAATTT
C