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Detailed information on CNT30727603


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 1e-86

BLAST vs NONCODE:
NONBNAT004786, E-value = 3e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318541Corchorus capsularisCorylus avellana86.8491.4782.05429forward
CNT30500451Corchorus capsularisCoffea canephora53.6424.8483.77265forward
CNT3021362Corchorus capsularisCitrullus lanatus8362.9883.17410forward
CNT30504810Corchorus capsularisNicotiana attenuata75.7157.4584.76374forward
CNT30710642Corchorus capsularisGlycine max33.417.6584.24165forward
CNT30637312Corchorus capsularisCapsicum annuum8395.3583.41410forward
CNT3098150Corchorus capsularisSolanum tuberosum56.8857.3581.49281forward
CNT30222279Corchorus capsularisHordeum vulgare31.3851.3283.23155forward
CNT30510868Corchorus capsularisSolanum lycopersicum33.8180.2985.63167forward
CNT30143812Corchorus capsularisMedicago truncatula81.9832.7483.21405forward
CNT30244810Corchorus capsularisAvena sativa28.3417.3382.86140forward
CNT30457014Corchorus capsularisSaccharum spontaneum28.3418.3285140forward
CNT30231964Corchorus capsularisAnanas comosus34.2113.8581.66169forward
CNT3066796Corchorus capsularisLeersia perrieri28.3435.9984.29140forward
CNT30595456Corchorus capsularisOryza meridionalis32.1927.8982.39159forward
CNT30358465Corchorus capsularisLactuca sativa62.3529.5382.14308forward
CNT30424172Corchorus capsularisPapaver somniferum67.4147.7182.88333forward
CNT30645151Corchorus capsularisCannabis sativa54.8628.4481.55271forward
CNT3055709Corchorus capsularisAmborella trichopoda35.6326.9182.39176forward
CNT30325711Corchorus capsularisAsparagus officinalis63.9799.0679.43316forward
CNT30580107Corchorus capsularisEchinochloa crusgalli28.3426.9784.29140forward
CNT30497454Corchorus capsularisDigitaria exilis31.3841.6783.87155forward
CNT30594668Corchorus capsularisEragrostis curvula32.1947.1883.65159forward
CNT30174824Corchorus capsularisVigna angularis65.383482.35323forward
CNT30336663Corchorus capsularisCynara cardunculus72.0676.2382.3356forward
CNT30723923Corchorus capsularisLupinus angustifolius41.510087.8205forward
CNT3050773Corchorus capsularisCucumis sativus53.2446.884.41263forward

Expression of CNT30727603

Peptides detected in this lncRNA

>peptide 1 (48 aa)
TNWIDISPVGLFLGMLKRITINLTRAGEQKPRANSLCKPQHIKSTHHI*

>peptide 2 (80 aa)
MSNQFKPRISKKMNQILFSSSEEIINNNHFIASFNELINKMTPNEPSTTRDHDPHSPPSDPNRHPPHLILKGLIGRDGIGS

Sequence

>CNT30727603
ACCAATTGGATTGACATTTCCCCAGTAGGTCTCTTTCTGGGGATGCTCAAGCGGATCACCATAAACCTCACTCGTGCTGGTGAGCAAAAACCTCGCGCCA
ACTCTCTTTGCAAGCCCCAACATATTAAGAGTACCCATCACATTTGATATGATGGTCTTAACGGGATTGTATTTATAATGAACCGGAGAAGCAGGGCAAG
CTAAATGATAGATCTGATCCACTTCTAAGAGAATTGGCTCAACAACATCATGTCGAATCAGTTCAAACCTCGGATTTCCAAAAAGATGAACCAAATTCTC
TTTTCTTCCAGTGAAGAAATTATCAATAACAATCACTTCATCGCCTCTTTTAATGAGCTTATCAACAAGATGACTCCCAACGAACCCAGCACCACCCGTG
ACCACGATCCTCATTCTCCGCCGTCCGATCCCAACCGGCACCCGCCCCACCTTATTTTGAAAGGGCTTATTGGCAGGGATGGAATAGGAAGTGG