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Detailed information on CNT30727591


BLAST search results

BLAST vs Swiss-Prot:
sp|P50378|EFTU_GONPE, E-value = 1e-13

BLAST vs NONCODE:
NONBNAT001751, E-value = 8e-151

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546688Corchorus capsularisIpomoea triloba15.9310090.23430forward
CNT30380192Corchorus capsularisManihot esculenta17.1920.3492.67464forward
CNT30525464Corchorus capsularisPhaseolus vulgaris20.6798.7687.46558forward
CNT30195181Corchorus capsularisPisum sativum17.1197.4789.61462forward
CNT3093993Corchorus capsularisSolanum tuberosum17.1988.8990.09464forward
CNT3084119Corchorus capsularisVigna radiata19.5629.6686.17528forward
CNT30665783Corchorus capsularisTriticum dicoccoides30.3389.985.23819forward
CNT3011290Corchorus capsularisZea mays31.8162.4784.52859forward
CNT3067093Corchorus capsularisLeersia perrieri9.7458.8490.11263forward
CNT30646927Corchorus capsularisRosa chinensis11.794.0591.14316forward
CNT30685754Corchorus capsularisTriticum urartu31.9351.9683.76862forward
CNT30338600Corchorus capsularisEragrostis tef16.8194.5888.55454forward
CNT30480842Corchorus capsularisArabidopsis halleri10.357.0890.65278forward
CNT30423787Corchorus capsularisPapaver somniferum17.1924.9189.66464forward
CNT30570869Corchorus capsularisVitis vinifera12.3310090.39333forward
CNT30120974Corchorus capsularisCitrus clementina17.3377.2392.31468forward
CNT30101083Corchorus capsularisOryza rufipogon16.7884.8388.08453forward
CNT30580076Corchorus capsularisEchinochloa crusgalli14.9630.5488.37404forward
CNT30116334Corchorus capsularisOryza nivara15.817088.52427forward
CNT30176122Corchorus capsularisVigna angularis30.5972.9786.08826forward

Expression of CNT30727591

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MSLTAKRPRGGYSEKVSTTMGLVGIILTIPASPFFKNLGSFSSSFPDRLSIFVKSSANLTAMWEVWQSSTGAYPFPIWPG*

>peptide 2 (74 aa)
MSRSINDSAVVLSCLELPEGNINGDTTFTLSLKLVKNPGILKGPLVHLSSLLLEPFNHTLVNTTKLVDQVTSGG*

>peptide 3 (30 aa)
MMRTAQSACEVPVIMFLIKSRCPGASMTVQ*

>peptide 4 (36 aa)
VALEEELLICFKYAENTTFGIKICLLVNTETFNRNS*

>peptide 5 (44 aa)
MVIPRSRSALSLSRTQAYLKDLLFISAASFSNLSITRLSIPPSL*

>peptide 6 (54 aa)
MVHLDRLNFSGQSRGTKGDNHTRLKNTSLNTTNRDSSNTTNLVDILKWETEWLV*

Sequence

>CNT30727591
CGTAGCCCTGGAGGAAGAGCTCTTAATATGCTTCAAATATGCAGAAAACACCACATTTGGCATTAAAATATGCTTACTTGTGAACACAGAAACATTTAAC
AGAAATTCTTAAATTAAGATTGTTTTAAAAGCATCCAACTACAATTTTAAAGCAGACATTGACAAATTTGTAGAAGTCTCAATCAAAACATAACAGATAG
AAAGCATATAAAAGTCATCCACAAAACCGCAATGTAAAATACTCAGAATAAATTAAAGACCAAAATTAAAAGACCAACTATCATCCTAGCTGTAATAGTA
CTCTCTCTCAAAAGCAACCTCATTTCTTCTTGGCAGCAGACTTGGTGACCTTAGCACCAGATGGGTCCTTCTTCTCAACACTCTTGATAACACCAACAGC
AACAGTCTGCCTCATGTCCCTAACAGCAAAACGTCCAAGAGGTGGGTACTCAGAGAAAGTCTCCACAACCATGGGCTTAGTGGGAATCATCTTAACCATC
CCGGCATCACCGTTCTTCAAGAACTTAGGCTCCTTCTCGAGCTCCTTTCCAGATCGTCTGTCAATCTTTGTCAAGAGTTCAGCAAACTTGACAGCAATGT
GGGAGGTGTGGCAATCGAGCACCGGGGCGTATCCATTTCCGATCTGGCCAGGGTGAAGTTGGCAGCTTCCTTGGCAGGATCATCCTTAGAGTTAGATGCG
ACGTAACCACGCTTGAGATCCTTAACAGCAACGTTCTTAACATTGAACCCGACATTGTCACCGGGGAGAGCCTCCTGGAGAGCTTCATGGTGCATCTCGA
CAGACTTAACTTCAGTGGTCAGTCCAGAGGGACCAAAGGTGACAACCATACCAGGCTTAAGAACACCAGTCTCAACACGACCAACAGGGACAGTTCCAAT
ACCACCAATCTTGTAGACATCCTGAAGTGGGAGACGGAGTGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGAGCCTCAAGGAGTGTTGGA
CCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAATCATGTTATCACCCTCAAAACCAGAGATTGGGACGAATGGGATTTTGTCTGGGTTGTAACCAACCT
TCTTCAGGTAAGAAGAGACTTCCTTAACAATTTCATCATACCTTGCCTTGGAGTACTTTGGAGTTGTGGCATCCATCTGTTTCAAAGGACAGAAACATCC
AGTTAGTCACAAATTAGGTTTAAGTAAAGCAATTATCAATAATAAAGTAAAATCAAAGCAATACAACGTTAAACAAAAGTTCAACCAGTTTCAGTCACAA
GCAATTATCAACAAATTGACATAAAATCAATACAATGTTAAACAATAACAAGTTTTAAACCTCACCTTGTTGCAGCAGCAAATCATTTGCTTGACACCAA
GGGTAAAAGCAAGCAAAGCATGCTCACGGGTCTGACCATCCTTAGAGATACCGGCTTCAAAACCACCAGTGGTTGAGTCAATGATGAGAACAGCACAGTC
AGCCTGTGAGGTACCAGTAATCATGTTCTTGATAAAGTCACGATGTCCAGGAGCATCAATGACAGTGCAGTAGTACTTAGTTGTCTCGAACTTCCAGAGG
GCAATATCAATGGTGATACCACGTTCACGCTCAGCCTTAAGCTTGTCAAGAACCCAGGCATACTTAAAGGACCTCTTGTTCATCTCAGCAGCCTCCTTCT
CGAACCTTTCAATCACACGCTTGTCAATACCACCAAGCTTGTAGATCAAGTGACCAGTGGTGGTTGACTTTCCAGAGTCGACATGGCCAATGACCACAAT
GTTGATGTGAACCTTCTCCTTACCCATTATAAAACTCGGTAGAGAAGCTGAAACCCAACAAAAAATACATCATCATAAAACAGATTACATACAGATAATC
GAAATCTAGACTCAGAAACACATAGTATTACCCTTTGCCTAACAGTGATAACAGATCCACATCAATAACATACAATTAGCTATCTAATTTGAAAAAAAAA
GTTTCAGAGAGAATAATTGAACGTACATAAAATCCACAAAAAAAGGTAACCCAGAATTAAAATCCAAAAGATTCAACTAAAACAGAGTGTGGCTGCTGGG
ATTCGAGCCCAGGCCCTCCAAATAGATGGAGTTCTCCACTAAACTACAGCCACTAGATCTCAAAAAATCGTTTCCCGTTCAAAACAAATAAGCCTAAGAA
GTAATGATCGTTGACCATTTTGTTTATTTTTGTTAACAAAAATCTCTTAGGCTGTATTTACTTTGATAGATCGGTAATCAGAGGTATTGTTTTCTCAGAA
AACAAAGATTAGAATTGTAAATCACAAAATCTTAAACAAACAGCGACAGATGCTTGAAATCTAATAAGCAATCGATTTAAAAACAAAAGAATCAGATCCT
AAGCTACAAATATAAAGAATATGAATCAAGCAAAGCAAATCAGATCAGAATAATCTCAAATCAAACAGAGGAATACAAAAATTAACTTTTCGTATACCTA
TAACAAAATCATACAAGAGATAGAGCTAATAGTTCATCTAACGAACACTCAAATCAGGTTTTGCTTCAAATCAAAGCAAAAGAAAAAAGAATAAAATAAA
AACATTGATTGAGAAAAGGAATTATACCTGTAAGCTAACAAAAAGACTTTGAGATTCGCTTGACCTGAAGCTCTCGTCGTAGCAGCTGAAGAGAGCGTAG