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Detailed information on CNT30727588


BLAST search results

BLAST vs Swiss-Prot:
sp|P50378|EFTU_GONPE, E-value = 5e-14

BLAST vs NONCODE:
NONBNAT001751, E-value = 4e-151

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673342Corchorus capsularisSetaria viridis37.1353.7187.78499forward
CNT30287202Corchorus capsularisTriticum aestivum35.2765.9286.08474forward
CNT30440878Corchorus capsularisAegilops tauschii18.6831.9390.44251forward
CNT30598511Corchorus capsularisFraxinus excelsior35.3472.9688475forward
CNT30647369Corchorus capsularisRosa chinensis21.0631.2488.69283forward
CNT3024873Corchorus capsularisPopulus trichocarpa28.1267.0289.15378forward
CNT30116111Corchorus capsularisOryza nivara2538.487.5336forward
CNT30726405Corchorus capsularisLupinus angustifolius38.6296.6588.63519forward

Expression of CNT30727588

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MSLTAKRPRGGYSEKVSTTMGLVGIILTIPASPFFKNLGSFSSSFPDRLSIFVKSSANLTAMWEVWQSSTGAYPFPIWPGWFMMIT*

>peptide 2 (54 aa)
MVHLDRLNFSGQSRGTKGDNHTRLKNTSLNTTNRDSSNTTNLVDILKWETEWLV*

>peptide 3 (37 aa)
IVALEEELLICFKYAENTTFGIKICLLVNTETFNRNS*

Sequence

>CNT30727588
AAATCGTAGCCCTGGAGGAAGAGCTCTTAATATGCTTCAAATATGCAGAAAACACCACATTTGGCATTAAAATATGCTTACTTGTGAACACAGAAACATT
TAACAGAAATTCTTAAATTAAGATTGTTTTAAAAGCATCCAACTACAATTTTAAAGCAGACATTGACAAATTTGTAGAAGTCTCAATCAAAACATAACAG
ATAGAAAGCATATAAAAGTCATCCACAAAACCGCAATGTAAAATACTCAGAATAAATTAAAGACCAAAATTAAAAGACCAACTATCATCCTAGCTGTAAT
AGTACTCTCTCTCAAAAGCAACCTCATTTCTTCTTGGCAGCAGACTTGGTGACCTTAGCACCAGATGGGTCCTTCTTCTCAACACTCTTGATAACACCAA
CAGCAACAGTCTGCCTCATGTCCCTAACAGCAAAACGTCCAAGAGGTGGGTACTCAGAGAAAGTCTCCACAACCATGGGCTTAGTGGGAATCATCTTAAC
CATCCCGGCATCACCGTTCTTCAAGAACTTAGGCTCCTTCTCGAGCTCCTTTCCAGATCGTCTGTCAATCTTTGTCAAGAGTTCAGCAAACTTGACAGCA
ATGTGGGAGGTGTGGCAATCGAGCACCGGGGCGTATCCATTTCCGATCTGGCCAGGGTGGTTCATGATGATAACCTGAGAGGTGAAGTTGGCAGCTTCCT
TGGCAGGATCATCCTTAGAGTTAGATGCGACGTAACCACGCTTGAGATCCTTAACAGCAACGTTCTTAACATTGAACCCGACATTGTCACCGGGGAGAGC
CTCCTGGAGAGCTTCATGGTGAAGTTGGCAGCTTCCTTGGCAGGATCATCCTTAGAGTTAGATGCGACGTAACCACGCTTGAGATCCTTAACAGCAACGT
TCTTAACATTGAACCCGACATTGTCACCGGGGAGAGCCTCCTGGAGAGCTTCATGGTGCATCTCGACAGACTTAACTTCAGTGGTCAGTCCAGAGGGACC
AAAGGTGACAACCATACCAGGCTTAAGAACACCAGTCTCAACACGACCAACAGGGACAGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGGAGA
CGGAGTGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGAGCCTCAAGGAGTGTTGGACCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAA
TCATGTTATCACCCTCAAAACCAGAGATTGGGACGAATGGGATTTTGTCTGGGTTGTAACCAACCTTCTTCAGGTAAGAAGAGACTTCCTTAACAATTTC
ATCATACCTTGCCTTGGAGTACTTTGGAGTTGTGGCATCCATCT