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Detailed information on CNT30727586


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 5e-172

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521302Corchorus capsularisSetaria italica73.4964.3687.03948forward
CNT30564257Corchorus capsularisActinidia chinensis73.3382.5586.36946forward
CNT3084148Corchorus capsularisVigna radiata43.4134.3886.79560forward
CNT3037774Corchorus capsularisCucumis melo36.8261.4588.63475forward
CNT3050294Corchorus capsularisCucumis sativus41.0186.385.82529forward

Expression of CNT30727586

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVHLDRLNFSGQSRGTKGDNHTRLKNTSLNTTNRDSSNTTNLVDILKWETEWLV*

>peptide 2 (42 aa)
TTDAKIVALEEELLICFKYAENTTFGIKICLLVNTETFNRNS*

>peptide 3 (86 aa)
MSLTAKRPRGGYSEKVSTTMGLVGIILTIPASPFFKNLGSFSSSFPDRLSIFVKSSANLTAMWEVWQSSTGAYPFPIWPGWFMMIT*

Sequence

>CNT30727586
CCACAACAGATGCTAAAATCGTAGCCCTGGAGGAAGAGCTCTTAATATGCTTCAAATATGCAGAAAACACCACATTTGGCATTAAAATATGCTTACTTGT
GAACACAGAAACATTTAACAGAAATTCTTAAATTAAGATTGTTTTAAAAGCATCCAACTACAATTTTAAAGCAGACATTGACAAATTTGTAGAAGTCTCA
ATCAAAACATAACAGATAGAAAGCATATAAAAGTCATCCACAAAACCGCAATGTAAAATACTCAGAATAAATTAAAGACCAAAATTAAAAGACCAACTAT
CATCCTAGCTGTAATAGTACTCTCTCTCAAAAGCAACCTCATTTCTTCTTGGCAGCAGACTTGGTGACCTTAGCACCAGATGGGTCCTTCTTCTCAACAC
TCTTGATAACACCAACAGCAACAGTCTGCCTCATGTCCCTAACAGCAAAACGTCCAAGAGGTGGGTACTCAGAGAAAGTCTCCACAACCATGGGCTTAGT
GGGAATCATCTTAACCATCCCGGCATCACCGTTCTTCAAGAACTTAGGCTCCTTCTCGAGCTCCTTTCCAGATCGTCTGTCAATCTTTGTCAAGAGTTCA
GCAAACTTGACAGCAATGTGGGAGGTGTGGCAATCGAGCACCGGGGCGTATCCATTTCCGATCTGGCCAGGGTGGTTCATGATGATAACCTGAGAGGTGT
GGCAATCGAGCACCGGGGCGTATCCATTTCCGATCTGGCCAGGGTGGTTCATGATGATAACCTGAGAGGTGAAGTTGGCAGCTTCCTTGGCAGGATCATC
CTTAGAGTTAGATGCGACGTAACCACGCTTGAGATCCTTAACAGCAACGTTCTTAACATTGAACCCGACATTGTCACCGGGGAGAGCCTCCTGGAGAGCT
TCATGGTGCATCTCGACAGACTTAACTTCAGTGGTCAGTCCAGAGGGACCAAAGGTGACAACCATACCAGGCTTAAGAACACCAGTCTCAACACGACCAA
CAGGGACAGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGGAGACGGAGTGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGAGC
CTCAAGGAGTGTTGGACCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAATCATGTTATCACCCTCAAAACCAGAGATTGGGACGAATGGGATTTTGTCT
GGGTTGTAACCAACCTTCTTCAGGTAAGAAGAGACTTCCTTAACAATTTCATCATACCTTGCCTTGGAGTACTTTGGAGTTGTGGCATCC