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Detailed information on CNT30727466


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234912Corchorus capsularisBrassica oleracea17.5321.0884.6998forward
CNT3023179Corchorus capsularisPopulus trichocarpa19.8621.8984.68111forward

Expression of CNT30727466

Peptides detected in this lncRNA

>peptide 1 (69 aa)
SRLDDSTVLLWLGLWLLLLLLLPLLLQLLPLLMLIFSDGRGKLVLALAPRNSRPYQKSQAKHGSSSPDL*

>peptide 2 (99 aa)
MHLLVNPITVSVTLNCRRFLPRRHLKWKDFPFPFERNAKRVYKNTKGVIKCKSDLLFVVCLFERERKRRENASGLACGVEREGRGSEEDFIEGRRRNKRG

>peptide 3 (31 aa)
PGSMTQRCYSGSDSGCCCCCYYRYCYSYYHC*

Sequence

>CNT30727466
CTCCCGGCTCGATGACTCAACGGTGCTACTCTGGCTCGGACTCTGGTTGTTGCTGCTGTTGTTATTACCGTTATTGTTACAGTTATTACCATTGTTGATG
TTGATATTCTCAGATGGAAGGGGAAAATTAGTCTTAGCCTTAGCGCCACGAAATTCTCGGCCGTATCAAAAGTCCCAAGCCAAACACGGCTCTTCTTCCC
CGGATCTCTAATCTCAGCAGCATAACGGCCCCATGGCCGCTTCCTCACTCCTCTAAAATGCACCTCCTTGTTAATCCCATTACCGTTTCCGTTACCCTTA
ACTGCCGCCGTTTTCTCCCTCGGCGCCATTTAAAATGGAAAGACTTTCCGTTTCCGTTTGAAAGGAACGCAAAAAGGGTATATAAAAATACAAAAGGCGT
AATAAAATGCAAATCTGATTTATTATTCGTTGTTTGTTTGTTTGAGAGAGAGAGAAAGAGAAGAGAAAACGCAAGCGGATTGGCGTGTGGGGTTGAGAGA
GAAGGGAGGGGAAGCGAGGAGGATTTTATAGAGGGAAGAAGAAGGAATAAAAGAGGAGA