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Detailed information on CNT30727318


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-158

BLAST vs NONCODE:
NONTPRT002153, E-value = 5e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30275114Corchorus capsularisChenopodium quinoa60.9199.2984.89695forward
CNT30379315Corchorus capsularisManihot esculenta56.5351.0783.57645forward
CNT30511508Corchorus capsularisSolanum lycopersicum57.1449.8583.74652forward
CNT3032081Corchorus capsularisTheobroma cacao61.7979.0488.79705forward
CNT30595409Corchorus capsularisEragrostis curvula59.0774.2383.23674forward
CNT30334109Corchorus capsularisCynara cardunculus56.8840.4184.28649forward

Expression of CNT30727318

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MKGGFLLDVVIGQSSAVLELLPGEDKPLLVWGDPLLVLDLGLDVVDGVGALDFEGDGFSGQGFDKDLHTATETEDKVKG*

>peptide 2 (57 aa)
SSIHYKFQMQKWRLYIIFLKQRTQERHSIGDCKLRLIKEQRIGPNLQILFKINHYIT*

>peptide 3 (50 aa)
KFNPLQISDAKMATLYHLSETENTRKAFDWRLQIKINQRTENWAKFANFI*

>peptide 4 (33 aa)
MVSELSTSRVMVLPVRVLTKICILFGWLRRKNR*

>peptide 5 (31 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTR*

Sequence

>CNT30727318
AAAGTTCAATCCATTACAAATTTCAGATGCAAAAATGGCGACTTTATATCATCTTTCTGAAACAGAGAACACAAGAAAGGCATTCGATTGGAGACTGCAA
ATTAAGATTAATCAAAGAACAGAGAATTGGGCCAAATTTGCAAATTTTATTTAAGATTAACCATTACATAACATAAGGAAAGGTAAAGAGTAAAGACTAA
AATGATTTAGAAGGCCTCAACAGGGCCAAACATCACAACAATCCTTCACATATATCATAAATCCAGAGAAATCCCAGTACAGCAGGGAGCTTAGAAACCA
CCACGGAGACGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCTAGGGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAATC
TTTGCTGATCTGGAGGAATCCCTTCCTTGTCTTGAATTTTGGCCTTAACGTTATCAATTGTATCTGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCTGT
CAAAGTCTTGACAAAGATCTGCATCCCACCACGAAGCCTCAAGACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCC
TCGAGCTGCTTCCCGGCGAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCT
CGACTTCGAGGGTGATGGTTTTTCCGGTCAGGGTTTTGACAAAGATTTGCATACCGCCACGGAGACGGAGGACAAGGTGAAGGGTTGACTCCTTCTGGAT
GTTGTAATCGGCCAAGGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGAATCCCCTCCTTGTCTTGAATCTTAGCC
TTAACATTATCGATGGTATCGGAACTCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTTGTTTGGTTGGCTGAGGA
GAAAAAATCGATGAGAAAAAAAGCACAGAGAAGAAGGAGAATTATAGTAATCGTAATTGGGATGAGAAATTAAGGCGATTAGGGTCTTAATTTATAGCAA
AACAGCCGAAGGGGTAACGAATGATATTGCGACACGTAGGA