« Back to Corchorus capsularis search


Detailed information on CNT30727313


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-103

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30620193Corchorus capsularisCajanus cajan64.1971.1886457forward

Expression of CNT30727313

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVSELSTSRVMVLPVRVLTKICILFGWLRRKNR*

>peptide 2 (32 aa)
QGTENCGKFANFIKINPLHNTRKGKDRESKMI*

>peptide 3 (30 aa)
MVFPVRVLTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT30727313
CAAGGAACAGAGAATTGCGGTAAATTTGCAAATTTTATTAAGATAAACCCATTACATAACACAAGGAAAGGTAAAGACAGAGAGAGTAAAATGATTTAAA
ATTAAAAGGCCTCAACAGGGCCAGACATCAGAATTCTTCACATAAATCATAGATCATGCAGGGAGCTTAGAAACCACCACGGAGACGCAAGACAAGGTGG
AGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGAATCCCTT
CCTTGTCTTGAATTTTGGCCTTGACGTTATCGATAGTATCTGAGCTTTCCACCTCCAAAGTGATGGTTTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT
ACCGCCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAAGGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATC
AGACGCTGCTGGTCTGGAGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTAACATTATCGATGGTATCGGAACTCTCGACCTCGAGGGTGATGGTCTTGC
CGGTGAGGGTCTTGACGAAGATCTGCATCTTGTTTGGTTGGCTGAGGAGAAAAAATCGATGAGAAAAAAAGCACAGAGAAGAAGGAGAATTATAGTAATC
GTAATTGGGATG