Detailed information on CNT30727307


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0JEP3|BURP5_ORYSJ, E-value = 8e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703016Corchorus capsularisQuercus lobata20.0148.0978.7277forward
CNT30381078Corchorus capsularisManihot esculenta29.6235.8782.68410forward
CNT3095535Corchorus capsularisSolanum tuberosum8.3831.8781.03116forward
CNT30559860Corchorus capsularisActinidia chinensis10.5526.7980.82146forward
CNT30570403Corchorus capsularisVitis vinifera23.4142.3579.01324forward
CNT3033699Corchorus capsularisTheobroma cacao40.6140.2989.32562forward

Expression of CNT30727307

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKMEFFGQFGEILRRLCHPHLRRCHHLVS*

>peptide 2 (35 aa)
MDNFACGTLQICHLTSSALHLLLCTSAMGFAFPLL*

>peptide 3 (86 aa)
MDSPGYSISLTTFGIGVFGSAYFQYCSGDRAAWLATTASCNKKLKAKYISYSLIKSHTDCQNLLGIRNLQQGKQGPNRDETPLMKN*

>peptide 4 (37 aa)
MLMYLCGRWLLLWLLFHQHPPKEPCKPLLSLICGNRR*

>peptide 5 (35 aa)
MSCFSGFFEMILPALEPLFLRFKCNYLTIRTRGNR*

Sequence

>CNT30727307
CATGTCTTGTTTTTCTGGTTTTTTTGAGATGATTTTACCAGCCCTCGAACCCTTGTTTTTGAGATTCAAATGCAACTATCTAACCATCCGAACAAGGGGG
AACCGGTAATGGCATATCATTTGTAATCTTTTATTGCTGTTTTTCTTGGTAACTGCTGAAGGGGGGAGGTGGCAGAGCTTGGGTAATTGCTAGCCTTCAG
AGTGCTCGTGACTTAGAATTCAGGCTTTTACTTTTGGACCCAAACAATGTGATCCTGAGGAAGGAAATGGCAGATAGGAACGGTTCCTGGCTCGACTTTG
AGGACTTGGAAAGCCACATGCTTCGGGTTCCATGCTGATGTATCTGTGTGGCAGATGGCTGCTGCTTTGGCTTTTGTTCCATCAGCACCCTCCAAAGGAA
CCATGTAAGCCCTTGTTGTCTCTGATTTGTGGCAATAGAAGATAGCATATGGATAATTTTGCTTGTGGCACACTACAGATTTGTCACCTGACATCTTCTG
CACTCCATCTGCTATTGTGTACTTCTGCAATGGGGTTTGCTTTTCCACTTCTGTAGAGATGGCCTGAACATTTTTGCCGATCTTAGAAGTGCTAAAGTCA
ATCATTGACTCTAGTGAGGTTGCACAGTATTTCTCCTCTCCCTTAATCTGTCGCCCTTCACATTCCTCAATTGTGTTCTTCATCATCTCAGCTTCTGCTG
ATCCAGGTGTGACTGAAAACTTGTTCAAGATTTCTGGCAACTTGTTGGATGAAAATGGAATTCTTTGGGCAATTTGGCGAGATACTCCGCCGCCTTTGCC
ACCCACATTTACGGAGGTGCCACCACCTGGTTTCCTAGTGTTCACTCCAACTCCGCCTTTTCCAACATTAACAGAAGTTCCCCCGGGCTTTCCTTTCCCA
GTATTTACATTTACACCGCCTTTCCCAACATTAACAGAAGTGCCGCTGGGCTTTCCTTTCCCGGTGTTTACATTCACTCCACCTTTTCCAACGTTCACCG
AAGTGCCGCTGGGCTTCCCTTTTCCTGTGTTCACGTTTACGCCACCACCCCCTACATTAACAGAGGCATGGACTCACCAGGATATAGCATATCTTTGACA
ACCTTCGGCATTGGAGTATTTGGCAGCGCATACTTCCAATATTGCTCCGGTGATAGAGCAGCTTGGCTTGCTACCACCGCAAGCTGCAACAAGAAGTTGA
AAGCAAAATATATTAGTTACTCTCTCATAAAATCACATACAGATTGTCAAAATCTACTTGGAATTAGAAACTTACAGCAAGGAAAGCAAGGACCCAACAG
AGACGAAACTCCATTGATGAAAAACTAACTGTGTGCTTAGCTATGGAAAGAAGAGAGTTTGCAAGTTAGGGTTTGTTGGAAAAG