« Back to Corchorus capsularis search


Detailed information on CNT30727306


BLAST search results

BLAST vs Swiss-Prot:
sp|D2CZZ9|BNM2C_BRANA, E-value = 6e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381084Corchorus capsularisManihot esculenta20.320.7881.65218forward
CNT30157116Corchorus capsularisPistacia vera7.0829.886.8476forward

Expression of CNT30727306

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKMEFFGQFGEILRRLCHPHLRRCHHLVS*

>peptide 2 (35 aa)
MDNFACGTLQICHLTSSALHLLLCTSAMGFAFPLL*

>peptide 3 (54 aa)
MDSPGYSISLTTFGIGVFGSAYFQYCSGDRAAWLATTASCNKKLKAKYISYSLIK

Sequence

>CNT30727306
ATAACTTCTCAAGTGATCCATAACTAACAATTGTAATACAGACAGTACCATCATTTTATCTATTACGAAATACATCTAGTTCTACATAAGAAAAGGTGCA
TAATCATCACTCGTAGCAAAAGTGAACTACATAGATTGTTCATATATCTAAACAAGTGGGTTTAGGGTATATAACTATAGAACAAACTGGATGTGGATTT
TAACTGTTTTAAATGCACACTATACTTAGTTGATTGATGAAATCTAAAGGCCCTTGTTGTCTCTGATTTGTGGCAATAGAAGATAGCATATGGATAATTT
TGCTTGTGGCACACTACAGATTTGTCACCTGACATCTTCTGCACTCCATCTGCTATTGTGTACTTCTGCAATGGGGTTTGCTTTTCCACTTCTGTAGAGA
TGGCCTGAACATTTTTGCCGATCTTAGAAGTGCTAAAGTCAATCATTGACTCTAGTGAGGTTGCACAGTATTTCTCCTCTCCCTTAATCTGTCGCCCTTC
ACATTCCTCAATTGTGTTCTTCATCATCTCAGCTTCTGCTGATCCAGGTGTGACTGAAAACTTGTTCAAGATTTCTGGCAACTTGTTGGATGAAAATGGA
ATTCTTTGGGCAATTTGGCGAGATACTCCGCCGCCTTTGCCACCCACATTTACGGAGGTGCCACCACCTGGTTTCCTAGTGTTCACTCCAACTCCGCCTT
TTCCAACATTAACAGAAGTTCCCCCGGGCTTTCCTTTCCCAGTATTTACATTTACACCGCCTTTCCCAACATTAACAGAAGTGCCGCTGGGCTTTCCTTT
CCCGGTGTTTACATTCACTCCACCTTTTCCAACGTTCACCGAAGTGCCGCTGGGCTTCCCTTTTCCTGTGTTCACGTTTACGCCACCACCCCCTACATTA
ACAGAGGCATGGACTCACCAGGATATAGCATATCTTTGACAACCTTCGGCATTGGAGTATTTGGCAGCGCATACTTCCAATATTGCTCCGGTGATAGAGC
AGCTTGGCTTGCTACCACCGCAAGCTGCAACAAGAAGTTGAAAGCAAAATATATTAGTTACTCTCTCATAAAAT