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Detailed information on CNT30727279


BLAST search results

BLAST vs Swiss-Prot:
sp|P33081|AX15A_SOYBN, E-value = 3e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30508399Corchorus capsularisSolanum lycopersicum6.9439.1584.3483forward

Expression of CNT30727279

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MEENKRNISKSLESSKYLRMCEDMNWVANGLILACIYR*

>peptide 2 (51 aa)
MFTFLYILVISDVCLLHKIAQADCSLKDHCRREVTSRNMSSSQRILRPPVG*

>peptide 3 (49 aa)
MGQGVLSVVRETWVHEAITWCCLLTFDQEIHGEITRKKICLPATCCKRN*

Sequence

>CNT30727279
GATAAGTCTTGCTATCATGCCAATCCGCTTGTAAAATAGAGCAAAGTTGGCCCTGAGGGTTCAAGTATACGAATATATGCAACAGAATAAGTGAGAGTGG
ATTTTTAGATCAAGGTAGCATATGTGACAGAAATAAAATATACCTAAACAAGAAATGAAAAATTCAATTGAATGATAGCATACAAACTGTCATTTCTCAA
ATTAGATTGAAAGGTTTTTGATAGAAGTTAATTACAGTAACACACCATCTCTAGTTTTCCACTTAGGGAGACTTATATCTGCTCCCCAAGGCAAAAAGGA
TGGGAAAAAATGTTTACATTTCTCTATATATTAGTGATTAGTGATGTTTGCTTGCTTCACAAAATTGCACAGGCTGACTGTTCTCTCAAAGATCATTGCA
GACGAGAGGTAACATCAAGAAACATGTCTTCATCGCAGAGGATTCTGAGGCCACCAGTAGGATGAGTATATCCGAACTCTTCTTCTGACAAGCCGAGCAG
ATCTTGAAATAAAGGCTGGTTCAAGTATGAAACTGGGATCACAAACCTCTTCTGGTTTTCTCCAACATAAACTGCAAAGTGACCCTTGGGAATTTTCTTA
TTAGAACTAACAATACTAGGCAAGCGGATAGCCATCTTTTTTCTTTGATGAGAATGAGTTGAGTGTTTATGGAAGAGAATAAGAGGAATATCTCAAAAAG
CTTGGAAAGTAGTAAGTACTTGAGAATGTGTGAAGATATGAATTGGGTTGCCAATGGACTAATTCTTGCTTGTATATATAGATGAAATTAGGGTATACAA
GGAAGTTGGCCTTTGCTAATAATTGAGTGAGAATGGGTCAAGGGGTCTTATCAGTGGTGAGAGAGACGTGGGTTCATGAAGCTATCACATGGTGTTGTCT
TTTAACATTTGATCAAGAAATTCACGGTGAGATCACTAGGAAGAAAATTTGCCTGCCGGCCACTTGCTGCAAGAGGAATTGACTCAGGACCCACTGATCA
GATATGGAAGACGATTTGGAACCGTAAAAGCTTGTGAGTTGTAACAATGTCAAGAATACTTCTCCATTTGTGTCAAATATGTACAGCCCTAGTTGTTGCT
CTATTCACAACCAGACATAGCTAAATTGACACTTGAAGAAATGATATTAAGTTTTAGCAGACAAACCAAGAATTGCAGCCACCTCATATTTAGAAG