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Detailed information on CNT30727252


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF6|TBB6_GOSHI, E-value = 7e-106

BLAST vs NONCODE:
NONGMAT000204, E-value = 3e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522155Corchorus capsularisSetaria italica29.5125.1483.71221forward
CNT30641074Corchorus capsularisNymphaea colorata44.7391.2882.69335forward
CNT30377201Corchorus capsularisArabidopsis thaliana56.4873.9583.69423forward
CNT30629386Corchorus capsularisVigna unguiculata14.2941.4785.98107forward
CNT30486254Corchorus capsularisOlea europaea23.7746.4885.39178forward
CNT30710178Corchorus capsularisGlycine max38.7268.484.83290forward
CNT3092760Corchorus capsularisSolanum tuberosum21.523.2791.3161forward
CNT30559885Corchorus capsularisActinidia chinensis39.2556.1186.05294forward
CNT30586804Corchorus capsularisMusa acuminata21.7621.1183.44163forward
CNT30542792Corchorus capsularisBrassica napus35.1160.682.89263forward
CNT30553024Corchorus capsularisOryza glaberrima27.914.6484.69209forward
CNT3015387Corchorus capsularisZea mays47.822.1382.4358forward
CNT30203517Corchorus capsularisHelianthus annuus58.4838.9782.42438forward
CNT30595966Corchorus capsularisOryza meridionalis27.934.0985.65209forward
CNT30119164Corchorus capsularisCitrus clementina39.1262.8887.37293forward

Expression of CNT30727252

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MLLSASVNSISSIPSPVYQCKKALRRNMAVNCSLTLLNISWIDVEFPTNVDDIFRPFGGISQTLDFTLLGIHSTKYDEFLF*

>peptide 2 (66 aa)
MVVVLSLIPFSCILVLLILCHQVIHVALCFCELHFIHSFTSVPMQESLAPEHGCELFTHPPEHLLD*

>peptide 3 (41 aa)
MSSSPQMSMTSSDPLVGYRKHSTSHCWESTPRSMMNSCSEH*

Sequence

>CNT30727252
AGATACTCCTATTTAATTATTATGATGATTAAGCTTTATAATTCCCAATTCGCATCCCAATGTGCCCATGAGCATTAGCGGGTGTCGCAAGTAAAACTGA
AAGTAATTCTTTATTTAGATGTCTGAAAAAAGCAAACAACAACATCATCATCATCTTGGGAAATACAAGTAGAAAGCAGTCAAAATTAAACAAACACAGA
TAGCCACGCAGTAGTAGAATATAAGCAAAGTATATAATGGTGCTAATCTCAAACATTCATGGTGGTAGTGCTCTCCCTCATTCCTTTTAGTTGCATCCTG
GTATTGCTGATACTCTGCCACCAAGTCATTCATGTTGCTCTCTGCTTCTGTGAACTCCATTTCATCCATTCCTTCACCAGTGTACCAATGCAAGAAAGCC
TTGCGCCGGAACATGGCTGTGAATTGTTCACTCACCCTCCTGAACATCTCCTGGATTGATGTCGAGTTCCCCACAAATGTCGATGACATCTTCAGACCCT
TTGGTGGGATATCGCAAACACTCGACTTCACATTGTTGGGAATCCACTCCACGAAGTATGATGAATTCTTGTTCTGAACATTGATCATCTGCTCATCTAC
CTCTTTGGTGCTCATCTTTCCCCTGAACATTGCTGAGGCTGTCAAGTAGCGACCGTGACGAGGGTCAGCAGCACACATCATGTTCTTGGCATCCCACATC
TGCTGAGTCAGCTCTGGGACTGTGAGGGAAATGTACTGCTGGGAACCAC