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Detailed information on CNT30727222


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 5e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547910Corchorus capsularisIpomoea triloba21.1717.4783.93112forward
CNT30375776Corchorus capsularisArabidopsis thaliana31.9528.3184.02169forward
CNT30524765Corchorus capsularisPhaseolus vulgaris50.8533.5479.93269forward
CNT30628528Corchorus capsularisVigna unguiculata55.9533.3781.08296forward
CNT30708652Corchorus capsularisGlycine max38.3765.4882.27203forward
CNT30146554Corchorus capsularisMedicago truncatula18.926.9588100forward
CNT30176366Corchorus capsularisVigna angularis55.9561.879.73296forward

Expression of CNT30727222

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MAAATRPAGVVAPLLVSWLKAIPEPEPAKTKTSVEMNSANPCLRVPG*

>peptide 2 (54 aa)
MLPPTKAPKVTAGLTWPPERVMLPPTKRPKVTAGLTWPPEMLAAIETATKRPKA*

Sequence

>CNT30727222
GGCGAATGCGAGTAAAATGAGAGCGACGACAGAACCAAGGAGTTGGGCGATGATGTAGACGAGGCCACGGAAGAGAGTGATGTTACCGCCAACGAAAGCA
CCGAAGGTGACGGCAGGGTTGACGTGGCCACCGGAGAGAGTGATGTTACCGCCGACGAAAAGGCCGAAGGTGACGGCAGGGTTGACGTGGCCACCGGAAA
TGTTGGCGGCAATTGAGACAGCGACGAAAAGGCCGAAGGCATGAGCTATGGCGGCGGCGACAAGACCGGCGGGGGTGGTTGCTCCGTTGCTGGTGAGCTG
GTTGAAGGCGATACCGGAGCCTGAACCGGCAAAGACGAAGACGAGTGTTGAGATGAACTCAGCCAACCCTTGCTTAAGAGTACCGGGGTGAGTTGCCTCC
TCGAACCGGCCGACGGCGATGTTTCTGATCGGCATGTTTACCGTATGATCAAAATCAAGCGGTGGGGGGAAGTGGGGAGTGTTTGTTTGAGAGAGAAGAG
AGTGTTTTTGGTCTCTGGTCTGGTCTCCA