Detailed information on CNT30727210


BLAST search results

BLAST vs Swiss-Prot:
sp|P10796|RBS1B_ARATH, E-value = 2e-53

BLAST vs NONCODE:
NONCQUT001608, E-value = 5e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282594Corchorus capsularisChenopodium quinoa8.6541.586.49222forward
CNT30633374Corchorus capsularisCapsicum annuum8.6125.7681221forward
CNT3091744Corchorus capsularisSolanum tuberosum8.2220.5781.99211forward
CNT3075084Corchorus capsularisBrassica juncea9.2827.4282.77238forward
CNT30261239Corchorus capsularisBrassica rapa9.2830.1381.93238forward

Expression of CNT30727210

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MRESRTSSSQVVAIPKFTNFNKLDSNFIQLNLKLSFEIHHLILRI*

>peptide 2 (53 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGRRIRATQGNTKFNISKKQRKKKRV*

>peptide 3 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 4 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 5 (67 aa)
MHTCMHRTLPPLLTMEVMSLLFLRVVGKAEADLRPTNGATKVACAGEARLTTVADDIIAEAIASTPY*

>peptide 6 (78 aa)
MHTCMHRTLPPLLTMEVMSLLFLRVVGKAEADLRPTNGATMEACAGEARLTTVADDIIEEAIASTPYAKGLCTNIIST*

>peptide 7 (66 aa)
MFNCSNCCAYIYAYLHASNSATIADDGGDVFVVLAGGGESRGRLEANEWGDHGGLCGGGTANDGGG*

>peptide 8 (66 aa)
MFNCSNCCAYIYAYLHASNSATIADDGGDVFVVLAGGGESRGRLEANEWGDQGGLCRGGTVNNGGG*

>peptide 9 (35 aa)
MRESRTSSSQVVAIPKFTNFNKLDSNFIQLNLKYL*

>peptide 10 (35 aa)
MENDLQFEFQARNPSRAEKVVYFLSQLHGGEIREV*

>peptide 11 (33 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGSLLP*

>peptide 12 (30 aa)
WFLSVIIFMNISDITFFSQFPHLIHLNEHI*

Sequence

>CNT30727210
TCTGGTTTTTATCAGTGATCATTTTCATGAACATTTCTGATATTACATTTTTTTCCCAATTCCCCCACTTAATTCATCTTAATGAACATATATAGTTTAC
ATTGAGAAATCACACATGAATTTCAAAGATCTCTTAAGATGGAAGAACCATAAGTAAAACAAATACAACCAAGTAAAGCAAATATATAGTTGGAGAACTT
AAAATACAGAGAAAAGGGTTCATAAAATATATGGCAAGGAACTAGTATCTTTATTATTCATTAAGTTCTCAGCCGTTCCATTGGAAATCAAAAACCCAGA
ATTCAAAAAAACAAAGGACAATACCTCAAAAAGAAAGGAAAAGTAAAAAGGTTTCGACAAATGCTAAGTACAATTTAAACAAGCCGAATCCCTACAATGT
GGGGAAAACAACTCTGTTCATTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCGATG
ATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGG
TCCAGTAGCGTCCATCGTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGACGAATCCGTGCTACACAAGGCAATACCAAATTCAATATCAGCAAAAAAC
AGAGAAAAAAAAAGAGAGTGTAAATTAAACTAAGTTTAGTTATAGAGAGAGCATGGAAAATGGAAAATGACCTCCAATTCGAATTCCAAGCAAGGAATCC
ATCCAGAGCGGAGAAGGTAGTCTACTTCCTTAGCCAATTGCACGGGGGTGAGATCCGGGAGGTATGAGAGAGTCTCGAACTTCTTCTTCCCAAGTGGTGG
CCATACCTAAATTCACCAATTTCAACAAATTGGATTCAAATTTCATCCAATTGAATTTGAAATACCTATAGAAATTTGTCATTTGAAATTCATCATCTTA
TACTACATATATGAAATATTTAATCATAATTGCTTCCCCTACTTGAATCCGCGATATCTGATATGTCTCAATTTCTAATTAACTAAGACCCAATAATGTA
GTTACCGTATATCAGGAGTTTCGTACACAATTTATTTATATATATGGGGGTATGTGCATTTCTTCCTATTAGGTAATATATATAAATGAGATCCAAATTC
AAATCTAAAATCTACATTTTCCCAAACATAGCATGACAAATTGAAAGAATTTAGCTTTGCTAATTAAAGCTTTAATATGTCATTTTATGTTCAATTGTAG
TAATTGTTGTGCATATATATATGCATACCTGCATGCATCGAACTCTGCCACCATTGCTGACGATGGAGGTGATGTCTTTGTTGTTCTTGCGGGTGGTGGG
GAAAGCAGAGGCAGACTTGAGGCCAACGAATGGGGCGACCAAGGTGGCCTGTGCCGGGGAGGCACGGTTAACAACGGTGGCGGATGACATCATTGCGGAA
GCCATTGCTAGTACTCCTTACTAAAGCCGAATCCCTACTTAATGTGGGGAAAACAACTCTATTTTCTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCA
ATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCAATGATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACA
CCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGGTCCAGTAGCGTCCATCGTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGTCTAC
TTCCTTAGCCAATTGCACGGGGGTGAGATCCGGGAGGTATGAGAGAGTCTCGAACTTCTTCTTCCCAAGTGGTGGCCATACCTAAATTCACCAATTTCAA
CAAATTGGATTCAAATTTCATCCAATTGAATTTGAAATTGTCATTTGAAATTCATCATCTTATACTACGTATATGAAATATTTAATCATAATTGCTTCCC
CTACTTGAATCTGTGATATCTGATATGTCTCAATTTCTGATTAACTAAGACCCAATAATGTAGTTACCGTATATCAGGAGTTTCGTACACAATTTATTTA
TATATATGGGGGTATGTGCATTTCTTCCTATTAGGTAATATATATAAATGAGATCCAAATTCAAATCTAAAATCTACATTTTCCCAAACATAGCATGACA
AATTGAAAGAATTTAGCTTTGCTAATTAAAGCTTTAATATGTCATTTTATGTTCAATTGTAGTAATTGTTGTGCATATATATATGCATACCTGCATGCAT
CGAACTCTGCCACCATTGCTGACGATGGAGGTGATGTCTTTGTTGTTCTTGCGGGTGGTGGGGAAAGCAGAGGCAGACTTGAGGCCAACGAATGGGGCGA
CCATGGAGGCCTGTGCGGGGGAGGCACGGCTAACGACGGTGGCGGATGACATCATTGAGGAAGCCATTGCTAGTACTCCTTATGCTAAAGGACTATGTAC
TAATATAATCAGTACTTAATAGTGATTCTGCCCAACTGCCAATACCCCCTATATATAATGAAAAAC