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Detailed information on CNT30727208


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 5e-46

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30409644Corchorus capsularisPapaver somniferum20.4518.6782.22180forward
CNT30705707Corchorus capsularisPrunus avium21.1416.586.56186forward
CNT30319154Corchorus capsularisAsparagus officinalis31.1440.6581.39274forward

Expression of CNT30727208

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 2 (56 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGRRIRATQGNTKFNISKKQRKKRECKLN*

>peptide 3 (68 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCEAWGLVGNETDALHLTLVVESNDSDEGLGVFLLGLLKLLQHLG*

>peptide 4 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

Sequence

>CNT30727208
CCAATTCCCCCACTTAATTCATCTTAATGAACATATATAGTTTACATTGAGAAATCACACATGAATTTCAAAGATCTCTTAAGATGGAAGAACCATAAGT
AAAACAAATACAACCAAGTAAAGCAAATATATAGTTGGAGAACTTAAAATACAGAGAAAAGGGTTCATAAAATATATGGCAAGGAACTAGTATCTTTATT
ATTCATTAAGTTCTCAGCCGTTCCATTGGAAATCAAAAACCCAGAATTCAAAAAAACAAAGGACAATACCTCAAAAAGAAAGGAAAAGTAAAAAGGTTTC
GACAAATGCTAAGTACAATTTAAACAAGCCGAATCCCTACAATGTGGGGAAAACAACTCTGTTCATTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCA
ATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCGATGATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACA
CCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGGTCCAGTAGCGTCCATCGTAGTACCCTGGGGAGCTGTGAAGCTTGGGGGCTTGTAG
GCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCAATGATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCA
ACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGGTCCAGTAGCGTCCATCGTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGAC
GAATCCGTGCTACACAAGGCAATACCAAATTCAATATCAGCAAAAAACAGAGAAAAAAAAGAGAGTGTAAATTAAACTAA