Detailed information on CNT30727202


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 6e-44

BLAST vs NONCODE:
NONCQUT001608, E-value = 5e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3091655Corchorus capsularisSolanum tuberosum10.6930.5882.7185forward
CNT30545373Corchorus capsularisBrassica napus11.0331.3183.25191forward
CNT30573704Corchorus capsularisVitis vinifera10.7523.8283.87186forward
CNT30705711Corchorus capsularisPrunus avium8.2627.586.01143forward
CNT30115242Corchorus capsularisEutrema salsugineum9.5933.1384.94166forward

Expression of CNT30727202

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 2 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 3 (72 aa)
MHTCMHRTLPPLLTMEVMSLLFLRVVGKAEADLRPTNGATMEACAGEARLTTVADDIIEEAIASTPYAKGLCT

>peptide 4 (45 aa)
MRESRTSSSQVVAIPKFTNFNKLDSNFIQLNLKLSFEIHHLILRI*

>peptide 5 (56 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGRRIRATQGNTKFNISKKQRKKRECKLN*

>peptide 6 (66 aa)
MFNCSNCCAYIYAYLHASNSATIADDGGDVFVVLAGGGESRGRLEANEWGDHGGLCGGGTANDGGG*

>peptide 7 (69 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGEAWGLVGNETDALHLTLVVESNDSDEGLGVFLLGLLKLLQHLG*

>peptide 8 (30 aa)
WFLSVIIFMNISDITFFSQFPHLIHLNEHI*

>peptide 9 (35 aa)
MENDLQFEFQARNPSRAEKVVYFLSQLHGGEIREV*

Sequence

>CNT30727202
TCTGGTTTTTATCAGTGATCATTTTCATGAACATTTCTGATATTACATTTTTTTCCCAATTCCCCCACTTAATTCATCTTAATGAACATATATAGTTTAC
ATTGAGAAATCACACATGAATTTCAAAGATCTCTTAAGATGGAAGAACCATAAGTAAAACAAATACAACCAAGTAAAGCAAATATATAGTTGGAGAACTT
AAAATACAGAGAAAAGGGTTCATAAAATATATGGCAAGGAACTAGTATCTTTATTATTCATTAAGTTCTCAGCCGTTCCATTGGAAATCAAAAACCCAGA
ATTCAAAAAAACAAAGGACAATACCTCAAAAAGAAAGGAAAAGTAAAAAGGTTTCGACAAATGCTAAGTACAATTTAAACAAGCCGAATCCCTACAATGT
GGGGAAAACAACTCTGTTCATTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCGATG
ATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGG
TCCAGTAGCGTCCATCGTAGTACCCTGGGGAGCTGTGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAAT
CCAATGATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCC
ACATGGTCCAGTAGCGTCCATCGTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGACGAATCCGTGCTACACAAGGCAATACCAAATTCAATATCAGCA
AAAAACAGAGAAAAAAAAGAGAGTGTAAATTAAACTAAGTTTAGTTATAGAGAGAGCATGGAAAATGGAAAATGACCTCCAATTCGAATTCCAAGCAAGG
AATCCATCCAGAGCGGAGAAGGTAGTCTACTTCCTTAGCCAATTGCACGGGGGTGAGATCCGGGAGGTATGAGAGAGTCTCGAACTTCTTCTTCCCAAGT
GGTGGCCATACCTAAATTCACCAATTTCAACAAATTGGATTCAAATTTCATCCAATTGAATTTGAAATTGTCATTTGAAATTCATCATCTTATACTACGT
ATATGAAATATTTAATCATAATTGCTTCCCCTACTTGAATCTGTGATATCTGATATGTCTCAATTTCTGATTAACTAAGACCCAATAATGTAGTTACCGT
ATATCAGGAGTTTCGTACACAATTTATTTATATATATGGGGGTATGTGCATTTCTTCCTATTAGGTAATATATATAAATGAGATCCAAATTCAAATCTAA
AATCTACATTTTCCCAAACATAGCATGACAAATTGAAAGAATTTAGCTTTGCTAATTAAAGCTTTAATATGTCATTTTATGTTCAATTGTAGTAATTGTT
GTGCATATATATATGCATACCTGCATGCATCGAACTCTGCCACCATTGCTGACGATGGAGGTGATGTCTTTGTTGTTCTTGCGGGTGGTGGGGAAAGCAG
AGGCAGACTTGAGGCCAACGAATGGGGCGACCATGGAGGCCTGTGCGGGGGAGGCACGGCTAACGACGGTGGCGGATGACATCATTGAGGAAGCCATTGC
TAGTACTCCTTATGCTAAAGGACTATGTACT