Detailed information on CNT30727197


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FF31|LRL21_ARATH, E-value = 1e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379990Corchorus capsularisManihot esculenta15.3567.5780.22273forward
CNT30402810Corchorus capsularisBeta vulgaris5.2326.284.9593forward
CNT3099214Corchorus capsularisSolanum tuberosum7.6531.7880.88136forward
CNT30171019Corchorus capsularisTrifolium pratense4.523.5386.2580forward

Expression of CNT30727197

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MKVTILTWEVLLMVATSLINSSPPPPLDSLRTFTATKRPSGIPLWSKFRTILQNKGLNSFTVLPFSSALEIC*

>peptide 2 (44 aa)
ETKMDLLLNVKLTTYIIVLLHLNESMKHYSLSCTILDCENNDVG*

>peptide 3 (82 aa)
MTTTIVAAATPNPTSEKGTVKFSLHCSPKPLVRATARVSELGLSSKICTIEANARPITLLRHDPRASFVAAERLAKADVTTK*

>peptide 4 (30 aa)
MNVIMGLPSSQLNSNPGRPQYCGLPRCRKG*

>peptide 5 (42 aa)
MISSIHTAIELMVREPYRLICHSWTIIIEGYILGVIRNVERP*

>peptide 6 (35 aa)
MMLGRSSGETLEEKTEMVWVGLPEIECFLVTFLGP*

Sequence

>CNT30727197
CTGAAACCAAAATGGACCTACTATTGAATGTGAAATTGACTACATATATAATTGTTCTTTTACACTTGAACGAAAGTATGAAACATTACTCACTCTCATG
CACAATATTAGATTGTGAGAATAATGATGTTGGGTAGGAGTTCCGGGGAGACCTTGGAGGAGAAAACAGAAATGGTGTGGGTGGGATTGCCAGAGATTGA
ATGCTTCCTTGTAACATTTCTAGGACCTTAGTCATTGGTGGACGCTCTGATGGGTTACTTTGAATGCACCACAAGCCCACCATTATCATCTTTCTAGCTA
TTTCTTCATTATCAACTCTTATTCCTTGAAGATTCAAATCTGCCCCTTCTTGAAGGCGCTGATGAATCCATAAAGGAAAATTCTCTTGACCACTCTGACT
GTGAACATTTTCCTTTTCTCCAATCATATCAAGGACCATCATCCCATAGCTATAAACATCAGACTTGTGAGAGACTCCTCCAAAGCTTCGACAAAATACC
TCTGGAGCAATATATCCAATAGTTCCTCTAGCACTTATTGTAGAAAGAATACTCTCCTTCCGCTCACATAATTTAGCTAGACCAAAATCAGATATTTTAG
GACAGAAGCTTTCATCTAGAAGGATGTTATGAGGTTTTATGTCGAAGTGTAAAATTCTTGTGTTACAACCTTGATGCAAGTATTCCAGTCCTCTAGCAAT
GCCGATTGCAATTTCATACAATGTTTTCAGCTCTAGTTGATGGCATTTATCTGGAGAAGATGCTTGATGACAGATGAACTTGTCCAATGATCCATTGGGC
ATAAATTCATAAATTAGAGCTCTTATTGAGCTCTCATAGCAAAAACCAATGAAGGTTACTATATTGACATGGGAGGTTCTACTAATGGTAGCTACTTCAT
TGATAAATTCCTCTCCACCGCCCCCTTTGGATTCACTTAGGACTTTCACTGCAACAAAACGGCCATCAGGAATACCTCTTTGGAGCAAGTTCAGAACCAT
TCTGCAAAATAAAGGCCTCAATTCTTTCACGGTTCTTCCTTTTTCTTCCGCTCTGGAAATTTGTTAATATAATTCCCCTTGGCGATGATGCTTTCTTAAG
CCTGAAGGCAACCACCATAATAATGACTACTACCATAGTGGCTGCAGCAACTCCCAACCCTACTTCAGAGAAAGGGACAGTAAAATTTTCACTCCATTGC
AGTCCAAAGCCATTAGTAAGAGCCACAGCCAGAGTTTCTGAACTTGGATTGTCCTCCAAAATCTGCACCATCGAAGCAAATGCTAGGCCGATAACACTGC
TACGGCATGATCCCAGGGCCTCCTTTGTTGCAGCTGAAAGGTTGGCGAAGGCAGATGTGACCACAAAGTAGCCTACCTGAACATGATCAGTTCCATTCAT
ACTGCAATTGAACTGATGGTTAGAGAGCCCTATAGATTGATTTGCCATAGTTGGACAATCATAATAGAGGGTTACATTCTTGGTGTTATAAGAAACGTAG
AAAGGCCCTAGATTCGAAGATATGTTTACAAGTTGCTGGGGACAAAGGATCTGATTCCTGTCATCGGTTGGACCAACAGTGAGCATTCGAAGCATAATGT
TGAAGGTGTAAACTTGGTAACGCTTTGACATGAATGTAATCATGGGATTACCATCCTCACAACTTAACTCAAACCCTGGCCGGCCGCAATACTGTGGGCT
ACCCCGTTGTCGGAAAGGGTAACTGATATTCTGGATGACTCCACATTGAAATGGTTTGTTGCATTCTGGGGATTTCTC