Detailed information on CNT30727195


BLAST search results

BLAST vs Swiss-Prot:
sp|P10796|RBS1B_ARATH, E-value = 3e-55

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535503Corchorus capsularisEucalyptus grandis14.1726.6586.52230forward
CNT30712618Corchorus capsularisGlycine max14.640.5883.97237forward
CNT30146094Corchorus capsularisMedicago truncatula13.4342.8381.19218forward
CNT3077965Corchorus capsularisBrassica juncea19.0436.9280.91309forward
CNT30613234Corchorus capsularisArabis alpina19.0454.2182.2309forward
CNT30357026Corchorus capsularisLactuca sativa13.1933.6581.78214forward

Expression of CNT30727195

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MARNYRSQPFHSKSNNKQQYLKRKEKCFRTMLYIIKYKLKKPNPYLMWGKQLYFLKLR*

>peptide 2 (30 aa)
WFLSVIIFMNISDITFFSQFPHLIHLNEHI*

>peptide 3 (45 aa)
MRESRTSSSQVVAIPKFTNFNKLDSNFIQLNLKLSFEIHHLILRI*

>peptide 4 (78 aa)
MHTCMHRTLPPLLTMEVMSLLFLRVVGKAEADLRPTNGATMEACAGEARLTTVADDIIEEAIASTPYAKGLCTNIIST*

>peptide 5 (66 aa)
MFNCSNCCAYIYAYLHASNSATIADDGGDVFVVLAGGGESRGRLEANEWGDHGGLCGGGTANDGGG*

>peptide 6 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 7 (33 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGSLLP*

Sequence

>CNT30727195
TCTGGTTTTTATCAGTGATCATTTTCATGAACATTTCTGATATTACATTTTTTTCCCAATTCCCCCACTTAATTCATCTTAATGAACATATATAGTTTAC
ATTGAGAAATCACACATGAATTTCAAAGATCTCTTAAGATGGAAGAACCATAAGTAAAACAAATACAACCAAGTAAAGCAAATATATAGTTGGAGAACTT
AAAATACAGAGAAAAGGGTTCATAAAATATATGGCAAGGAACTAGTATCTTTATTATTCATTAAGTTCTCAGCCGTTCCATTGGAAATCAAAAACCCAGA
ATTCAAAAAAACAAAGGACAATACCTCAAAAAGAAAGGAAAAGTAAAAAGGTTTCGACAAATGCTAAGTACAATTTAAACAAGCCGAATCCCTACAATGT
GGGGAAAACAACTCTGTTCATTTAAGCTGAGGTGAAGCTTGGGGGCTTGGTTCATAAAATATGGCAAGAAACTATCGTTCTCAGCCCTTCCATTCCAAAT
CAAACAACAAACAACAATACCTCAAAAGGAAAGAAAAATGTTTTCGAACAATGCTATATATAATTAAGTACAAGTTAAAGAAGCCGAATCCCTACTTAAT
GTGGGGAAAACAACTCTATTTTCTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCAA
TGATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACAT
GGTCCAGTAGCGTCCATCGTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGTCTACTTCCTTAGCCAATTGCACGGGGGTGAGATCCGGGAGGTATGAG
AGAGTCTCGAACTTCTTCTTCCCAAGTGGTGGCCATACCTAAATTCACCAATTTCAACAAATTGGATTCAAATTTCATCCAATTGAATTTGAAATTGTCA
TTTGAAATTCATCATCTTATACTACGTATATGAAATATTTAATCATAATTGCTTCCCCTACTTGAATCTGTGATATCTGATATGTCTCAATTTCTGATTA
ACTAAGACCCAATAATGTAGTTACCGTATATCAGGAGTTTCGTACACAATTTATTTATATATATGGGGGTATGTGCATTTCTTCCTATTAGGTAATATAT
ATAAATGAGATCCAAATTCAAATCTAAAATCTACATTTTCCCAAACATAGCATGACAAATTGAAAGAATTTAGCTTTGCTAATTAAAGCTTTAATATGTC
ATTTTATGTTCAATTGTAGTAATTGTTGTGCATATATATATGCATACCTGCATGCATCGAACTCTGCCACCATTGCTGACGATGGAGGTGATGTCTTTGT
TGTTCTTGCGGGTGGTGGGGAAAGCAGAGGCAGACTTGAGGCCAACGAATGGGGCGACCATGGAGGCCTGTGCGGGGGAGGCACGGCTAACGACGGTGGC
GGATGACATCATTGAGGAAGCCATTGCTAGTACTCCTTATGCTAAAGGACTATGTACTAATATAATCAGTACTTAATAGTGATTCTGCCCAACTGCCAAT
ACCCCCTATATATAATGAAAAAC